View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_41 (Length: 348)
Name: NF17903_low_41
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 9410525 - 9410837
Alignment:
| Q |
12 |
aagaatgtctgcatatctcagaaaagcattttacattgaattcatatcttcagaaaagcatgttctttgg-gaagattagtcatttattaatcaacggtg |
110 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
9410525 |
aagaatgtatgcatatctcagaaaagcattttacattgaattcatatcttcagaaaagcatgttccttggcgaagattagtcatttattaatcagcggtg |
9410624 |
T |
|
| Q |
111 |
agaaaacttcgtaccaatattataataaaccnnnnnnnn--tatagactagacaaaaatatgtgattaccccaaattgtagtataaactatgtttgcata |
208 |
Q |
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| T |
9410625 |
agaaaacttcgtaccaatattataataaaccaaaaaaaaaatatagactagacaaaaatacgtgattgcccgaaattgtagtataaactatgtttgcata |
9410724 |
T |
|
| Q |
209 |
tatttttgggacttttcacagtcaactgtatgtgacaaaattcaacacct-caacttgggaacttcaaagttcaatccaattaacttcactccttcaaag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9410725 |
tatttttgggacttttcacagtcaactgtatgtgac-aaattcaacacctccaacttgggagcttcaaagttcaatccaattaacttcactccttcaaag |
9410823 |
T |
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| Q |
308 |
gtcttccaatagat |
321 |
Q |
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||||||||||||| |
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| T |
9410824 |
ttcttccaatagat |
9410837 |
T |
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