View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_43 (Length: 342)

Name: NF17903_low_43
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_43
NF17903_low_43
[»] chr6 (2 HSPs)
chr6 (141-326)||(29978448-29978623)
chr6 (1-104)||(29978115-29978218)
[»] chr3 (1 HSPs)
chr3 (147-231)||(23779235-23779319)
[»] chr2 (2 HSPs)
chr2 (142-231)||(3192559-3192648)
chr2 (68-107)||(23997154-23997193)
[»] chr4 (4 HSPs)
chr4 (147-219)||(48479949-48480021)
chr4 (151-219)||(42502605-42502673)
chr4 (55-97)||(42502513-42502555)
chr4 (58-98)||(48480074-48480114)
[»] chr7 (2 HSPs)
chr7 (147-219)||(42429340-42429412)
chr7 (55-108)||(42429244-42429297)
[»] chr8 (2 HSPs)
chr8 (55-108)||(10072256-10072309)
chr8 (72-104)||(22957118-22957150)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 141 - 326
Target Start/End: Original strand, 29978448 - 29978623
Alignment:
Q  141 gatgacactaaattctttatcatttattttcttcgatccatgtgagtgtgtctaactgctttctctttgtgtttgtgctgatgcaagacttactctgaat 240  Q
    ||||| |||||||||||||||||||||||||||| ||        || | ||||||| |||| |||||||||||||||| | |||||||||| ||  |||    
T  29978448 gatgagactaaattctttatcatttattttcttcaat--------gtatatctaactactttttctttgtgtttgtgctcaagcaagacttaatcccaat 29978539  T
Q  241 gcacactactactcgatactcacaataaatatagttgaacacattttttgtagttttgcacctttgtgtgtggtccacattggata 326  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29978540 gcacactgctactcgatactcacaataaata--gttgaacacattttttgtagttttgcacctttgtgtgtggtccacattggata 29978623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29978115 - 29978218
Alignment:
Q  1 atgaaacacatacatgacatgagcaccacaaaaatctcctcagtaccaatgcacgagaaatacttgtatagtcataaacacaaataaaaagtggttagac 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29978115 atgaaacgcatacatgacatgagcaccacaaaagtctcctcagcaccaatgcacgaaaaatacttgtatagtcataaacacaaataaaaagtggttagac 29978214  T
Q  101 acac 104  Q
    ||||    
T  29978215 acac 29978218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 23779235 - 23779319
Alignment:
Q  147 actaaattctttatcatttattttcttcgatccatgtgagtgtgtctaactgctttctctttgtgtttgtgctgatgcaagactt 231  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| |||||  |||| | |||||||||||||| | |||||||||    
T  23779235 actaaattctttatcatttcttttcttccatctatgtgagtgtgcctaaccactttttatttgtgtttgtgctcaagcaagactt 23779319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 3192559 - 3192648
Alignment:
Q  142 atgacactaaattctttatcatttattttcttcgatccatgtgagtgtgtctaactgctttctctttgtgtttgtgctgatgcaagactt 231  Q
    |||| |||||||||||||| ||||||||||||| || ||||||||||| |||||   |||| | |||||||||||||| | |||||||||    
T  3192559 atgaaactaaattctttattatttattttcttccattcatgtgagtgtatctaagcactttttatttgtgtttgtgcttaagcaagactt 3192648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 23997154 - 23997193
Alignment:
Q  68 atagtcataaacacaaataaaaagtggttagacacacaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23997154 atagtcataaacacaaataaaaagtggttagacacacaca 23997193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 48480021 - 48479949
Alignment:
Q  147 actaaattctttatcatttattttcttcgatccatgtgagtgtgtctaactgctttctctttgtgtttgtgct 219  Q
    |||||||||||||||||||||||||||| |||||||| |||||| |||||  |||| | ||| ||||||||||    
T  48480021 actaaattctttatcatttattttcttccatccatgttagtgtgcctaaccactttttatttatgtttgtgct 48479949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 42502605 - 42502673
Alignment:
Q  151 aattctttatcatttattttcttcgatccatgtgagtgtgtctaactgctttctctttgtgtttgtgct 219  Q
    |||||||||||||||||||||||| ||| |||| ||||| ||||||  |||| | ||||||||||||||    
T  42502605 aattctttatcatttattttcttccatctatgttagtgtttctaaccactttttatttgtgtttgtgct 42502673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 42502513 - 42502555
Alignment:
Q  55 gagaaatacttgtatagtcataaacacaaataaaaagtggtta 97  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  42502513 gagaaatacttatatagtcacaaacacaaataaaaagtggtta 42502555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 48480114 - 48480074
Alignment:
Q  58 aaatacttgtatagtcataaacacaaataaaaagtggttag 98  Q
    |||||||| |||||||| ||||||||||| |||||||||||    
T  48480114 aaatacttatatagtcacaaacacaaatataaagtggttag 48480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 42429340 - 42429412
Alignment:
Q  147 actaaattctttatcatttattttcttcgatccatgtgagtgtgtctaactgctttctctttgtgtttgtgct 219  Q
    |||||||||||||||||||||||||||  ||| |||| || |||||||||| |||| | ||||| ||||||||    
T  42429340 actaaattctttatcatttattttctttcatctatgtaagcgtgtctaactactttttatttgtttttgtgct 42429412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 42429244 - 42429297
Alignment:
Q  55 gagaaatacttgtatagtcataaacacaaataaaaagtggttagacacacacac 108  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||  ||||||||    
T  42429244 gagaaatacttatatagtcacaaacacagataaaaagtggttaggtacacacac 42429297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 10072309 - 10072256
Alignment:
Q  55 gagaaatacttgtatagtcataaacacaaataaaaagtggttagacacacacac 108  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||||| |||||||    
T  10072309 gagaaatacttatatagtcacaaacataaataaaacgtggttagacgcacacac 10072256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 22957118 - 22957150
Alignment:
Q  72 tcataaacacaaataaaaagtggttagacacac 104  Q
    ||||||| |||||||||||||||||||||||||    
T  22957118 tcataaatacaaataaaaagtggttagacacac 22957150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University