View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_46 (Length: 334)
Name: NF17903_low_46
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 2336679 - 2336378
Alignment:
| Q |
17 |
aataggaaggtgagtacatacacgaaatacttaacatatgtagacaaataaaaaatgataaacaattaagaaaacattggtgttttctttgttggagatc |
116 |
Q |
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| T |
2336679 |
aataggaaggtgagtacatacacgaaatacttaacatatgcagacaaataaaaaatgataaacaattaagaaaacattggtgttttctttgttgaagatc |
2336580 |
T |
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| Q |
117 |
tttcttatgctgataggtatcagtaacttgatgttggtttgcggtgggatacatggggtcgatttgttgaaaggagtacagcatatcagccaaatagagt |
216 |
Q |
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| T |
2336579 |
tttcttatgctgataggtatcagtaacttgatgttggtttgcggtgggatacatggggtcgatttgttgaaaggagtacagcatatcagccaaatagagt |
2336480 |
T |
|
| Q |
217 |
actttccctacatggtagagcagtattaaagacgnnnnnnngcgtatttatttattttctggaccagtaaaataataaattgctaccaggtttcagtttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2336479 |
actttccctacatggtagagcagtattaaagacgtttttttgcgtatttatttattttctggaccagtaaaataataaatcgctaccaggtttcagtttt |
2336380 |
T |
|
| Q |
317 |
ca |
318 |
Q |
| |
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|| |
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| T |
2336379 |
ca |
2336378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 47799724 - 47799620
Alignment:
| Q |
104 |
tttgttggagatctttcttatgctgataggtatcagtaacttgatgttggtttgcggtgggatacatggggtcgatttgttgaaaggagtacagcatatc |
203 |
Q |
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| T |
47799724 |
tttgttggagatctttcttatgctgataggtatcagtacactgatgttggtttgcggtgggatacatgggctcgatttgttgaaaggagtacagcatatc |
47799625 |
T |
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| Q |
204 |
agcca |
208 |
Q |
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||||| |
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| T |
47799624 |
agcca |
47799620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 47799549 - 47799490
Alignment:
| Q |
260 |
gtatttatttattttctggaccagtaaaataataaattgctacca-ggtttcagttttca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
47799549 |
gtatttatttattttctggaccagtaaaataataaatcgctaccacagtttcagttttca |
47799490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 47799594 - 47799564
Alignment:
| Q |
208 |
aaatagagtactttccctacatggtagagca |
238 |
Q |
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| T |
47799594 |
aaatagagtactttccctacatggtagagca |
47799564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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