View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_48 (Length: 327)

Name: NF17903_low_48
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_48
NF17903_low_48
[»] chr1 (5 HSPs)
chr1 (145-311)||(50005451-50005617)
chr1 (1-69)||(50005270-50005338)
chr1 (159-216)||(13193207-13193264)
chr1 (9-69)||(11923768-11923828)
chr1 (1-69)||(28260297-28260365)
[»] chr8 (17 HSPs)
chr8 (158-269)||(16848324-16848435)
chr8 (1-68)||(15081449-15081516)
chr8 (1-68)||(38082230-38082299)
chr8 (3-63)||(10404861-10404922)
chr8 (166-279)||(38082459-38082572)
chr8 (13-69)||(2262622-2262678)
chr8 (160-216)||(12310514-12310570)
chr8 (155-193)||(2262435-2262473)
chr8 (9-65)||(12310743-12310799)
chr8 (165-217)||(28856183-28856235)
chr8 (1-68)||(9295212-9295279)
chr8 (10-64)||(18180837-18180892)
chr8 (147-200)||(15081241-15081294)
chr8 (14-67)||(26150567-26150620)
chr8 (159-216)||(29019491-29019548)
chr8 (13-69)||(37490870-37490926)
chr8 (160-216)||(37491096-37491152)
[»] scaffold0251 (2 HSPs)
scaffold0251 (166-271)||(8494-8599)
scaffold0251 (12-62)||(8311-8361)
[»] chr6 (9 HSPs)
chr6 (9-69)||(27142628-27142688)
chr6 (158-269)||(2339435-2339546)
chr6 (166-272)||(5038792-5038898)
chr6 (9-69)||(8568741-8568801)
chr6 (147-274)||(19474997-19475124)
chr6 (166-262)||(10779513-10779609)
chr6 (13-67)||(2939848-2939903)
chr6 (14-67)||(3565615-3565667)
chr6 (147-179)||(19232010-19232042)
[»] chr4 (8 HSPs)
chr4 (175-281)||(24414331-24414437)
chr4 (147-261)||(15634318-15634431)
chr4 (4-69)||(15634539-15634606)
chr4 (1-64)||(54239489-54239552)
chr4 (166-256)||(54239216-54239306)
chr4 (10-67)||(2053162-2053219)
chr4 (10-64)||(13085246-13085301)
chr4 (1-64)||(18490390-18490453)
[»] chr3 (5 HSPs)
chr3 (174-282)||(27484707-27484815)
chr3 (159-274)||(1150799-1150914)
chr3 (5-68)||(1697148-1697211)
chr3 (1-46)||(33528308-33528353)
chr3 (14-67)||(19949880-19949933)
[»] chr7 (7 HSPs)
chr7 (146-279)||(16931136-16931269)
chr7 (146-279)||(16936519-16936652)
chr7 (10-67)||(5678366-5678423)
chr7 (10-67)||(5703418-5703475)
chr7 (159-256)||(721861-721960)
chr7 (171-258)||(22572741-22572828)
chr7 (10-56)||(13882840-13882886)
[»] chr5 (6 HSPs)
chr5 (1-67)||(15385098-15385164)
chr5 (1-67)||(35160871-35160936)
chr5 (9-49)||(7775315-7775355)
chr5 (166-257)||(35161117-35161208)
chr5 (172-280)||(14503723-14503831)
chr5 (1-69)||(36844474-36844542)
[»] chr2 (3 HSPs)
chr2 (10-67)||(18725748-18725805)
chr2 (159-216)||(5840761-5840818)
chr2 (1-69)||(5841182-5841249)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 145 - 311
Target Start/End: Original strand, 50005451 - 50005617
Alignment:
Q  145 tatgaggtctggagctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgt 244  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  50005451 tatgaggtcaggagctttccgaaaaggtataattcgagtcaatctgacatcggatatcaaatctgcactatttcaagtgattcattcttgcgcgccacgt 50005550  T
Q  245 catcttcgatacgcgccgccagtttacctagatcactatagcgtacctacattatgcaagacaatat 311  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50005551 catcttcgatacacgccgccagtttacctagatcactatagcgtacctacattatgcaagacaatat 50005617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 50005270 - 50005338
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  50005270 aagttctcgataattttattgaatgaaaaggtgtctcttaggctacgaaagttctgtttaaataatagg 50005338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 13193207 - 13193264
Alignment:
Q  159 ctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatt 216  Q
    |||||| |||||||||||||||||||||| |||||| | ||||||||||| |||||||    
T  13193207 ctttccgaaaaggtataattcgagtcaatatgacattgaatgtcaaatctgcactatt 13193264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 11923828 - 11923768
Alignment:
Q  9 gataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||  | ||||||||||||    
T  11923828 gataattttattgaatggaaaactgtctcttaggctacgaatgtttagcttaaatactagg 11923768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28260297 - 28260365
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    ||||||| |||| |||||||||||| |||| || || ||||||||||||||||  ||||||||||||||    
T  28260297 aagttctcgatatttttattgaatgcaaaactgccttttaggctacgaaagtttagtttaaatactagg 28260365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 16848435 - 16848324
Alignment:
Q  158 gctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacg 257  Q
    ||||||| |||| |||||||||  ||||||| ||||||||||||||||||| |||||||  |||||| || |||||  ||||||| ||||||||||||||    
T  16848435 gctttccgaaaatgtataattcaggtcaatccgacatcggatgtcaaatctgcactattctaagtgagtctttcttatgcgccacttcatcttcgatacg 16848336  T
Q  258 cgccgccagttt 269  Q
    ||||||||||||    
T  16848335 cgccgccagttt 16848324  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 15081516 - 15081449
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactag 68  Q
    ||||||| ||||||||||||||| |||||| || ||||||| ||||||||||| ||||||||||||||    
T  15081516 aagttctcgataattttattgaaggaaaaactgcctcttagactacgaaagttttgtttaaatactag 15081449  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38082230 - 38082299
Alignment:
Q  1 aagttcttgataatttt-attgaatgaaaaa-gtgtctcttaggctacgaaagttctgtttaaatactag 68  Q
    ||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  38082230 aagttctcgataatttttattgaatgaaaaaagtgcctcttaggctacgaaagttatgtttaaatactag 38082299  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 10404922 - 10404861
Alignment:
Q  3 gttcttgataattttattgaatgaaaaa-gtgtctcttaggctacgaaagttctgtttaaat 63  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||    
T  10404922 gttctcgataattttattgaatgaaaaaagtgcctcttaggctacgaaagctctggttaaat 10404861  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 279
Target Start/End: Original strand, 38082459 - 38082572
Alignment:
Q  166 aaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgcgccgcca 265  Q
    |||| ||||||||||||||| || |||| |||||| ||||||| |||||||   || || || |||||||||| ||| ||||||||||||| | | ||||    
T  38082459 aaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagcgagtctttcttgcgcgtcacttcatcttcgatacacactgcca 38082558  T
Q  266 gtttacctagatca 279  Q
    ||||| ||| ||||    
T  38082559 gtttatctatatca 38082572  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 2262678 - 2262622
Alignment:
Q  13 attttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    |||||||||||||||||| ||  |||||| ||||||||||| |||||||||||||||    
T  2262678 attttattgaatgaaaaactgcatcttagactacgaaagttatgtttaaatactagg 2262622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 12310570 - 12310514
Alignment:
Q  160 tttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatt 216  Q
    |||||||||| |||||||| ||||||||| ||||||||||| ||||||| |||||||    
T  12310570 tttccaaaaaagtataatttgagtcaatccgacatcggatgccaaatctgcactatt 12310514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 2262473 - 2262435
Alignment:
Q  155 ggagctttccaaaaaggtataattcgagtcaatctgaca 193  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  2262473 ggagctttccaaaaaggtataattcgagtcaatccgaca 2262435  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 12310799 - 12310743
Alignment:
Q  9 gataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatac 65  Q
    |||| ||||||||||||||||  || |||||||||||||||||||  ||||||||||    
T  12310799 gatatttttattgaatgaaaagttgcctcttaggctacgaaagtttagtttaaatac 12310743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 28856183 - 28856235
Alignment:
Q  165 aaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactattt 217  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| || |||||    
T  28856183 aaaaaggtataattcgagtcaatctaacgacggatgtcaaatctgcaatattt 28856235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9295279 - 9295212
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactag 68  Q
    ||||||| ||||||||||||||||| |||| ||||||| |  |||| ||||||  |||||||||||||    
T  9295279 aagttctcgataattttattgaatgtaaaactgtctctgaaactacaaaagtttagtttaaatactag 9295212  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 18180837 - 18180892
Alignment:
Q  10 ataattttattgaatgaaaaagtgtctcttaggctac-gaaagttctgtttaaata 64  Q
    ||||||||||||||| |||||||| ||||||||||||  || ||||||||||||||    
T  18180837 ataattttattgaatcaaaaagtgcctcttaggctacataatgttctgtttaaata 18180892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 15081294 - 15081241
Alignment:
Q  147 tgaggtctggagctttccaaaaaggtataattcgagtcaatctgacatcggatg 200  Q
    |||| ||| ||||||| | ||||||||||||||||||||||| |||| ||||||    
T  15081294 tgagctctagagcttttcgaaaaggtataattcgagtcaatccgacaccggatg 15081241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 26150620 - 26150567
Alignment:
Q  14 ttttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    |||||||||||||||||||| |||||| ||| |  ||||| |||||||||||||    
T  26150620 ttttattgaatgaaaaagtgcctcttaagctgcataagttttgtttaaatacta 26150567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 29019491 - 29019548
Alignment:
Q  159 ctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatt 216  Q
    ||||||||||||||||| ||| ||||| || |||| | |||||||||||| |||||||    
T  29019491 ctttccaaaaaggtatatttcaagtcattcggacaacagatgtcaaatctgcactatt 29019548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 37490870 - 37490926
Alignment:
Q  13 attttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    |||||||||||||||||| ||  ||||||| ||||||||||  |||| |||||||||    
T  37490870 attttattgaatgaaaaaatgcatcttaggttacgaaagtttagtttgaatactagg 37490926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 37491096 - 37491152
Alignment:
Q  160 tttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatt 216  Q
    ||||| |||||||||||||||||| |||| || ||||||||  |||| |||||||||    
T  37491096 tttccgaaaaggtataattcgagttaatccgatatcggatgcgaaatatacactatt 37491152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 8494 - 8599
Alignment:
Q  166 aaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgcgccgcca 265  Q
    |||||||||||||||||||||||| ||| || ||||||||||| |||||||  |||||| || ||||| |  | ||| ||||||||||||||||||||||    
T  8494 aaaaggtataattcgagtcaatctaacaccgaatgtcaaatctgcactattctaagtgagtctttcttacatgtcacttcatcttcgatacgcgccgcca 8593  T
Q  266 gtttac 271  Q
    ||||||    
T  8594 gtttac 8599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 8311 - 8361
Alignment:
Q  12 aattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaa 62  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8311 aatttgattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaa 8361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 27142628 - 27142688
Alignment:
Q  9 gataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  27142628 gataattttattgaatgaaaaactgcctcttaggctacgaaagttctgtttaaatactagg 27142688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 2339435 - 2339546
Alignment:
Q  158 gctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacg 257  Q
    ||||||| ||||||||||||||| |||| |||||||||||||   |||||||||| |||||||||||    |||||| | ||||| |||||||| ||| |    
T  2339435 gctttccgaaaaggtataattcgggtcattctgacatcggatacaaaatctacaccatttcaagtgagcatttcttgtgagccacttcatcttcaatatg 2339534  T
Q  258 cgccgccagttt 269  Q
    ||||||||||||    
T  2339535 cgccgccagttt 2339546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 272
Target Start/End: Original strand, 5038792 - 5038898
Alignment:
Q  166 aaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgcgccgcca 265  Q
    ||||||||||| || ||||||||||| | |||||  ||||||| ||||||| ||| ||| || |||||||| || || |||||||||| ||| |||||||    
T  5038792 aaaaggtataactcaagtcaatctgataccggataccaaatctgcactattccaaatgagtctttcttgcgtgctacttcatcttcgacacgtgccgcca 5038891  T
Q  266 gtttacc 272  Q
    |||||||    
T  5038892 gtttacc 5038898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 8568741 - 8568801
Alignment:
Q  9 gataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||  | ||||||||||||    
T  8568741 gataattttattgaatggaaaactgtctcttaggctacgaatgtttagcttaaatactagg 8568801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 19474997 - 19475124
Alignment:
Q  147 tgaggtctggagctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtca 246  Q
    ||||||| || | |||||||||| ||||||||||||||| || |||| |||||| ||||||| |||||||   |||||  | || |||||| || | |||    
T  19474997 tgaggtccggggatttccaaaaatgtataattcgagtcattccgacaccggatgccaaatctgcactattctgagtgaaccttttttgcgctccgcttca 19475096  T
Q  247 tcttcgatacgcgccgccagtttaccta 274  Q
    |||||||||  | |||||||||| ||||    
T  19475097 tcttcgatatccaccgccagtttgccta 19475124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 262
Target Start/End: Complemental strand, 10779609 - 10779513
Alignment:
Q  166 aaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgcgccg 262  Q
    |||||| |||||||  |||| ||||||| | ||||  |||||| ||| |||| ||||||  | |||||||||||||| |||||||| ||||||||||    
T  10779609 aaaaggaataattcaggtcattctgacaccagatgcaaaatctgcaccattttaagtgaacctttcttgcgcgccacttcatcttcaatacgcgccg 10779513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 2939848 - 2939903
Alignment:
Q  13 attttattgaatgaaaaagtgt-ctcttaggctacgaaagttctgtttaaatacta 67  Q
    |||||||||||||||||||||| |||||||||| |  |||||||| ||||||||||    
T  2939848 attttattgaatgaaaaagtgtcctcttaggctgcataagttctgcttaaatacta 2939903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 3565667 - 3565615
Alignment:
Q  14 ttttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    |||||||||||||||| ||| ||||| ||||||  |||||||||||||||||||    
T  3565667 ttttattgaatgaaaa-gtgcctctttggctacataagttctgtttaaatacta 3565615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 19232042 - 19232010
Alignment:
Q  147 tgaggtctggagctttccaaaaaggtataattc 179  Q
    |||||||||| ||||||||||||||||||||||    
T  19232042 tgaggtctggggctttccaaaaaggtataattc 19232010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 24414331 - 24414437
Alignment:
Q  175 aattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgcgccgccagtttaccta 274  Q
    |||||||||||||| |||||| ||| |||||||||||||||| |||||||    |||||||||||||| |||||||| |||||| || ||| ||||||||    
T  24414331 aattcgagtcaatccgacatcagatatcaaatctacactattccaagtgagcatttcttgcgcgccacttcatcttctatacgcaccaccaatttaccta 24414430  T
Q  275 gatcact 281  Q
     ||||||    
T  24414431 catcact 24414437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 15634431 - 15634318
Alignment:
Q  147 tgaggtctggagctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtca 246  Q
    ||||||||| |||||||| ||||| ||||||| ||||||||| |||| | ||||||||||||||| ||||||||  ||  | |||||| ||||||| |||    
T  15634431 tgaggtctgtagctttccgaaaagatataatttgagtcaatccgacaccagatgtcaaatctacaatatttcaaacga-gctttcttgtgcgccacttca 15634333  T
Q  247 tcttcgatacgcgcc 261  Q
     ||||||||| ||||    
T  15634332 acttcgatactcgcc 15634318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 15634606 - 15634539
Alignment:
Q  4 ttcttgataattttattgaatgaaaaa--gtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    |||| ||| ||||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||||    
T  15634606 ttctcgattattttattgaatgaaaaaaagtgtctcttagactacgaaagttatgtttaaatactagg 15634539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 54239552 - 54239489
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaata 64  Q
    ||||||| |||||||||||||| ||||||| ||| ||||||||||| |||||| ||||||||||    
T  54239552 aagttctcgataattttattgattgaaaaactgtatcttaggctaccaaagttttgtttaaata 54239489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 54239306 - 54239216
Alignment:
Q  166 aaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatac 256  Q
    |||| |||||||| ||||||||| ||| ||| ||||||||||||||||||||  | |||    |||||||||| ||| |||||||||||||    
T  54239306 aaaatgtataatttgagtcaatccgacttcgaatgtcaaatctacactattttcattgagcatttcttgcgcgtcacttcatcttcgatac 54239216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 2053162 - 2053219
Alignment:
Q  10 ataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    |||||||||||||||||| |||| ||||||||||| |  ||||| |||||||||||||    
T  2053162 ataattttattgaatgaataagtctctcttaggctgcataagttatgtttaaatacta 2053219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 13085246 - 13085301
Alignment:
Q  10 ataattttattgaatgaaaaagtgtctcttaggctac-gaaagttctgtttaaata 64  Q
    ||||||||||||||| ||||||||||||||||||| |  || ||||||||||||||    
T  13085246 ataattttattgaataaaaaagtgtctcttaggctgcataatgttctgtttaaata 13085301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 18490453 - 18490390
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaata 64  Q
    ||||||| |||||||||||||||||||||| | |||||||| |||| || |||  |||||||||    
T  18490453 aagttctcgataattttattgaatgaaaaactatctcttagactaccaatgtttagtttaaata 18490390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 27484707 - 27484815
Alignment:
Q  174 taattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgcgccgccagtttacct 273  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||| |  | |||||| ||||||| | |||||||||| | ||| ||||||| |||    
T  27484707 taattcgagtcgatctgacaccagatgtcaaatctacactatttcaagttaacctttcttgtgcgccactttatcttcgatatgtgccaccagtttgcct 27484806  T
Q  274 agatcacta 282  Q
    | |||||||    
T  27484807 aaatcacta 27484815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 1150914 - 1150799
Alignment:
Q  159 ctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgc 258  Q
    |||||| ||||||||| |||||| |||||| || |||||||||||||||| ||||||| | |  || || |||||||||||||| |||||||| |||| |    
T  1150914 ctttccgaaaaggtatcattcgaatcaatcggatatcggatgtcaaatctgcactattcccatcgaatctttcttgcgcgccacttcatcttcaatacac 1150815  T
Q  259 gccgccagtttaccta 274  Q
    || || ||||| ||||    
T  1150814 gcagctagtttgccta 1150799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 1697148 - 1697211
Alignment:
Q  5 tcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactag 68  Q
    |||||||||||||||||||||||||||| ||||||| | | |  ||||||||||||||||||||    
T  1697148 tcttgataattttattgaatgaaaaagtatctcttaagttgcataagttctgtttaaatactag 1697211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33528308 - 33528353
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctac 46  Q
    |||||||  |||||||||||||||||||||||||||||||| ||||    
T  33528308 aagttctctataattttattgaatgaaaaagtgtctcttagcctac 33528353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 19949933 - 19949880
Alignment:
Q  14 ttttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    ||||||| ||||| |||||| |||||||||| |  |||||||||||||||||||    
T  19949933 ttttattcaatgataaagtgactcttaggctgcataagttctgtttaaatacta 19949880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 16931269 - 16931136
Alignment:
Q  146 atgaggtctggagctttccaaaaaggtataattcgagtcaatctgacatcggatgtc-aaatctacactatttcaagtgattcattcttgcgcgccacgt 244  Q
    ||||||||||| ||||| ||||||| ||||||||||| ||||| |||| |||||| | |||||| ||||||| |||||||    |||||||  ||||| |    
T  16931269 atgaggtctgg-gcttttcaaaaagttataattcgagccaatccgacaccggatgccaaaatctgcactattccaagtgagcatttcttgcatgccactt 16931171  T
Q  245 catcttcgatacgcgccgccagtttacctagatca 279  Q
     |||||||||||||||||||| ||| |||| ||||    
T  16931170 aatcttcgatacgcgccgccaatttgcctacatca 16931136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 16936652 - 16936519
Alignment:
Q  146 atgaggtctggagctttccaaaaaggtataattcgagtcaatctgacatcggatgtc-aaatctacactatttcaagtgattcattcttgcgcgccacgt 244  Q
    ||||||||||| ||||| ||||||| ||||||||||| ||||| |||| |||||| | |||||| ||||||| |||||||    |||||||  ||||| |    
T  16936652 atgaggtctgg-gcttttcaaaaagttataattcgagccaatccgacaccggatgccaaaatctgcactattccaagtgagcatttcttgcatgccactt 16936554  T
Q  245 catcttcgatacgcgccgccagtttacctagatca 279  Q
     |||||||||||||||||||| ||| |||| ||||    
T  16936553 aatcttcgatacgcgccgccaatttgcctacatca 16936519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 5678366 - 5678423
Alignment:
Q  10 ataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    ||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||||    
T  5678366 ataattttattgaatgaaaaagtgtctcttaagctgcataagttctgtttaaatacta 5678423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 5703418 - 5703475
Alignment:
Q  10 ataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    ||||||||||||||||||||||||||||||| ||| |  |||||||||||||||||||    
T  5703418 ataattttattgaatgaaaaagtgtctcttaagctgcataagttctgtttaaatacta 5703475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 721861 - 721960
Alignment:
Q  159 ctttccaaaaaggtata--attcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatac 256  Q
    |||||||||||||||||  ||| ||||||||| |||| |||||| |||||||||||||||   | ||| || |||||| | ||||| |||||||||||||    
T  721861 ctttccaaaaaggtatataatttgagtcaatccgacaccggatggcaaatctacactattcacattgagtctttcttgtgtgccacttcatcttcgatac 721960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 22572741 - 22572828
Alignment:
Q  171 gtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgc 258  Q
    ||||||||||||||| |  ||||||||||| ||||| | | ||||| ||||||| || ||||| |||||||| ||| ||| |||||||    
T  22572741 gtataattcgagtcatttcgacatcggatgccaaatttgcgctattccaagtgagtctttcttacgcgccacttcacctttgatacgc 22572828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 13882840 - 13882886
Alignment:
Q  10 ataattttattgaatgaaaaagtgtctcttaggctacgaaagttctg 56  Q
    ||||||||||||||| ||||||||||||||||| |||  ||||||||    
T  13882840 ataattttattgaatcaaaaagtgtctcttaggatacataagttctg 13882886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15385098 - 15385164
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    ||||||| |||||||||||||||||||||| |||||  | ||| ||||||||||| |||||||||||    
T  15385098 aagttctcgataattttattgaatgaaaaaatgtcttatgggccacgaaagttctatttaaatacta 15385164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35160871 - 35160936
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    ||||||| ||||||||||||||||||||| | | ||||||| |||| ||||||||||||||||||||    
T  35160871 aagttctcgataattttattgaatgaaaacg-gcctcttagactaccaaagttctgtttaaatacta 35160936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 7775355 - 7775315
Alignment:
Q  9 gataattttattgaatgaaaaagtgtctcttaggctacgaa 49  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  7775355 gataattttattgaatggaaaaatgtctcttaggctacgaa 7775315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 35161117 - 35161208
Alignment:
Q  166 aaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacg 257  Q
    |||||||||||||||| |||| |  ||| |||||||||||||||||||||| ||| |||    ||||||  || ||| ||||||||||||||    
T  35161117 aaaaggtataattcgaatcaacccaacaacggatgtcaaatctacactattccaaatgaacatttcttgtacgtcacttcatcttcgatacg 35161208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 280
Target Start/End: Complemental strand, 14503831 - 14503723
Alignment:
Q  172 tataattcgagtcaatctgacatcggatgtcaaatctacactatttcaagtgattcattcttgcgcgccacgtcatcttcgatacgcgccgccagtttac 271  Q
    ||||||| |||||||||||||| | ||||| |||||| ||||||||  | |||  | |||||||||||||| | |||||| ||| | || |||| ||| |    
T  14503831 tataatttgagtcaatctgacaccagatgttaaatctgcactatttttattgaacctttcttgcgcgccactttatcttcaataagtgcagccactttgc 14503732  T
Q  272 ctagatcac 280  Q
    ||| |||||    
T  14503731 ctacatcac 14503723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36844474 - 36844542
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    ||||||| |||||||||||| |||||||||    ||||||| | |||||||||  ||||||||||||||    
T  36844474 aagttctcgataattttattaaatgaaaaacaacctcttagacgacgaaagtttagtttaaatactagg 36844542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 18725748 - 18725805
Alignment:
Q  10 ataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatacta 67  Q
    |||||||||||||||||||||||||||||||| |  |  ||||| |||||||||||||    
T  18725748 ataattttattgaatgaaaaagtgtctcttagaccgcataagttttgtttaaatacta 18725805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 5840818 - 5840761
Alignment:
Q  159 ctttccaaaaaggtataattcgagtcaatctgacatcggatgtcaaatctacactatt 216  Q
    |||||| |||| |||||||||||||||||| |||| ||| || ||||||| |||||||    
T  5840818 ctttccgaaaatgtataattcgagtcaatccgacaccggttgccaaatctgcactatt 5840761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5841249 - 5841182
Alignment:
Q  1 aagttcttgataattttattgaatgaaaaagtgtctcttaggctacgaaagttctgtttaaatactagg 69  Q
    ||||||| ||||||||||||||||| ||||  |||||||||||||| || |||  ||| ||||||||||    
T  5841249 aagttctcgataattttattgaatg-aaaatagtctcttaggctacaaatgtttagttaaaatactagg 5841182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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