View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_49 (Length: 322)

Name: NF17903_low_49
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_49
NF17903_low_49
[»] chr3 (1 HSPs)
chr3 (18-314)||(44531405-44531701)


Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 44531405 - 44531701
Alignment:
Q  18 tggtgttgttacctgttttgtggcattaacatttggaagagaacctaacaaaagaacactttgttttgtgtcatccattgaggttaaacaataagagaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44531405 tggtgttgttacctgttttgtggcattaacatttggaagagaacctaacaaaagaacactttgttttgtgtcatccattgaggttaaacaataagagaat 44531504  T
Q  118 ttttgttcttttaattgagaaaccaaagataaaggtccacgtcctaatccaaccaaccctgaagcttgttcaaacccttttccttcattgtcttcaccac 217  Q
    | |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44531505 tcttgttcttgtaattgagaaaccaaagataaaggaccacgtcctaatccaaccaaccctgaagcttgttcaaacccttttccttcattgtcttcaccac 44531604  T
Q  218 aaccaaaaccaatgtttttaactgaaacttggnnnnnnnnatcatcaccaaaagtgaatgtttcactacctaaaataccttgtgtcatagtataatc 314  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44531605 aaccaaaaccaatgtttttaactgaaacttggttttttttatcatcaccaaaagtgaatgtttcactacctaaaataccttgtgtcatagaataatc 44531701  T

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