View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_51 (Length: 317)

Name: NF17903_low_51
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_51
NF17903_low_51
[»] chr8 (3 HSPs)
chr8 (228-306)||(18106893-18106971)
chr8 (156-234)||(18082610-18082688)
chr8 (27-134)||(18082445-18082552)
[»] chr4 (2 HSPs)
chr4 (184-234)||(37875737-37875787)
chr4 (250-306)||(37876249-37876305)
[»] chr2 (2 HSPs)
chr2 (181-234)||(23895894-23895947)
chr2 (250-306)||(23895376-23895432)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 18106893 - 18106971
Alignment:
Q  228 actccattataggtttcatttcggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcat 306  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  18106893 actcaattataggtttcatttcggtctgtgtgttcctttgcacaccggcattataccttttctatgtgggagtcttcat 18106971  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 18082610 - 18082688
Alignment:
Q  156 ttatggagttatttagaaactgtagttttgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat 234  Q
    ||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||||||    
T  18082610 ttatgaagttgtttagaaactgtagttttgtatgtgtggcagatgaacatgtgtctaattccagagttctatactccat 18082688  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 18082445 - 18082552
Alignment:
Q  27 ttaagtatccaaagagttcatgaaattgaaggtaatggagagttattatgtcagcacatggtaattttcaaggaaaaatttcttccttttcctaggaatg 126  Q
    ||||||| |||||||||| | | ||||| || ||| ||||||| ||| |||  |||||||||||| |  ||||||||   |||||||||||| |||||||    
T  18082445 ttaagtacccaaagagttgaggtaattggagttaacggagagtcattttgttcgcacatggtaatctataaggaaaatcctcttccttttccgaggaatg 18082544  T
Q  127 aataattt 134  Q
    ||||||||    
T  18082545 aataattt 18082552  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 37875737 - 37875787
Alignment:
Q  184 tgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat 234  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37875737 tgtatgtgtggcagctgcacatgtgactagttccagagttgtatactccat 37875787  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 37876249 - 37876305
Alignment:
Q  250 ggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcat 306  Q
    |||||||||||||||||||| |||||||||||||||| || || |||||||||||||    
T  37876249 ggtctgtgtgttcctttgcaaaccggcattataccttctccatgtgggggtcttcat 37876305  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 23895947 - 23895894
Alignment:
Q  181 ttttgtatgtgtggcagctgcacatgtgactagttccagagttctatactccat 234  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23895947 tttngtatgtgtggcagctgcacatgtgactagttccagagttgtatactccat 23895894  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 23895432 - 23895376
Alignment:
Q  250 ggtctgtgtgttcctttgcacaccggcattataccttttctatatgggggtcttcat 306  Q
    |||||||||||||||||||| |||||||||||||||| || || |||||||||||||    
T  23895432 ggtctgtgtgttcctttgcaaaccggcattataccttctccatgtgggggtcttcat 23895376  T

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