View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_52 (Length: 315)
Name: NF17903_low_52
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 8443441 - 8443147
Alignment:
| Q |
1 |
cgatgatgctcaaccttgtacggcctcttcgcaagccgacaaataaaagtggtaagctttatgttgtgtctcttgtggttgggactatctctgtttattt |
100 |
Q |
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| T |
8443441 |
cgatgatgctcaaccttgtacggcctcttcgcaagccgaaagataaaagtggtaagctttatgttgtgtctcttgtggttgggactatctctgtttattt |
8443342 |
T |
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| Q |
101 |
gctagtttttaagtgtattaacggcttctaagttgtcaaaattaaaatatcacattatgtgtttgctggaataccaacaaagatgggttatttggaaaaa |
200 |
Q |
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| T |
8443341 |
gctagttttttggtgtattaacggctttcaagttgtcaaagttaaaatatcacattatgtgtttgctggaataccaacaaagatgggttatttggaaaaa |
8443242 |
T |
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| Q |
201 |
taaggtttggctaggtccctatgatgttggaatcagcttttgcaatcctttcatgctttggttgttgatcaaaattgacatcaaataaaataaaa |
295 |
Q |
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| T |
8443241 |
taaggtttggctaggtccctatgatgttgaaatcagcttttgcaaccctttcatgctttggttgttgatcaaaattgacatcaaataaaataaaa |
8443147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8441867 - 8441674
Alignment:
| Q |
1 |
cgatgatgctcaaccttgtacggcctcttcgcaagccgacaaataaaagtggtaagctttatgttgtgtctcttgtggttgggactatctctgtttattt |
100 |
Q |
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| T |
8441867 |
cgatgatgtttaaccttgtacgacctcttcggaagccgccagataaaggtggtaagctttatgttgtgtctcttgtggtttggactatctttgtttattt |
8441768 |
T |
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| Q |
101 |
gctagt--ttttaagtgtattaacggcttctaagttgtcaaaattaaaatatcacattatgtgtttgctggaataccaacaaagatgggttatt |
192 |
Q |
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| T |
8441767 |
gctagtgctttttggtgtattagtggcttccaagttgtcaaagttaaaataacacattatgtgtttgttggaataccaacaaagatgggttatt |
8441674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 8441475 - 8441411
Alignment:
| Q |
200 |
ataaggtttggctaggtccctatgatgttggaatcagcttttgcaatcctttcatgctttggttgt |
265 |
Q |
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| T |
8441475 |
ataaggtttggttaggtccctatggtgttggaatcaactttt-caaccatttcatgctttggttgt |
8441411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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