View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_54 (Length: 315)
Name: NF17903_low_54
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_54 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 49516852 - 49517152
Alignment:
| Q |
15 |
cacagatgaccacttgtgtgaatagtatgcttaaccttggggtaaatcttcaagatggagtcagttcaatggtcattatactatacttgttacctatagg |
114 |
Q |
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| T |
49516852 |
cacagatgaccacttgtgtgaatagtatgcttaaccttggggtaaatcttcaagatggagtcagttcaatggtcattatactatactttttacctatagg |
49516951 |
T |
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| Q |
115 |
aattatgttgttgcatccttgctggagcagcatccgccaatagattatgttaaacataataaggtccacaattgtgaaaagtaactacaagaatcttgga |
214 |
Q |
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| T |
49516952 |
aattatgttgttgcatccttgctggagcagcatccaccaatagattatgttaaacataataaggtccacaattgtgaaaagtaactacaagagtattgga |
49517051 |
T |
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| Q |
215 |
ttaaacaaaagtcattgttcattccattccactagcagctgcttgcattctgattaatacctctttccttaatattgcaagaccctccgttagtaatggt |
314 |
Q |
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| T |
49517052 |
ttaaacaaaagtcattgttcattccattccactagcagctgcttgtattctaaataatacctcttaccttaatcttgcaaggccttcccttagtcatggt |
49517151 |
T |
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| Q |
315 |
t |
315 |
Q |
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| T |
49517152 |
t |
49517152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 49515584 - 49515509
Alignment:
| Q |
74 |
gtcagttcaatggtcattatactatacttgttacctataggaattatgttgttgcatccttgctggagcagcatcc |
149 |
Q |
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| T |
49515584 |
gtcagtttgatggtcattatattatacttgttgcttatatgaattatgttgttgcatacttgtcggagcagcatcc |
49515509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 22990312 - 22990259
Alignment:
| Q |
83 |
atggtcattatactatacttgttacctataggaattatgttgttgcatccttgc |
136 |
Q |
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| T |
22990312 |
atggtaattatattatacttgttgcctatatgagttatgttgatgcatccttgc |
22990259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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