View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_6 (Length: 624)

Name: NF17903_low_6
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_6
NF17903_low_6
[»] chr6 (2 HSPs)
chr6 (5-612)||(13551740-13552349)
chr6 (576-612)||(24062042-24062078)
[»] chr7 (3 HSPs)
chr7 (530-579)||(12597074-12597123)
chr7 (578-612)||(45022682-45022716)
chr7 (576-612)||(11321502-11321538)
[»] chr8 (3 HSPs)
chr8 (578-612)||(38804895-38804929)
chr8 (583-612)||(32889137-32889166)
chr8 (576-612)||(32889011-32889047)
[»] chr4 (6 HSPs)
chr4 (574-612)||(11974899-11974937)
chr4 (577-610)||(27866450-27866483)
chr4 (576-612)||(3729297-3729333)
chr4 (576-612)||(11333060-11333096)
chr4 (576-612)||(37144065-37144101)
chr4 (576-612)||(38001256-38001292)
[»] chr3 (5 HSPs)
chr3 (578-612)||(28096097-28096131)
chr3 (583-612)||(22102179-22102208)
chr3 (576-612)||(3422862-3422898)
chr3 (576-612)||(7116198-7116234)
chr3 (576-612)||(42897087-42897123)
[»] chr5 (1 HSPs)
chr5 (576-612)||(38938824-38938860)
[»] chr1 (1 HSPs)
chr1 (576-612)||(8007192-8007228)


Alignment Details
Target: chr6 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 5 - 612
Target Start/End: Original strand, 13551740 - 13552349
Alignment:
Q  5 gtaatgggaattggagttacaatcactcaatcacttattgcagaagtgattggagcaaggaatggagaaatgttcatggtggggatgaacaaacaaagtg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  13551740 gtaatgggaattggagttacaatcactcaatcacttattgcagaagtgattgaagcaaggaatgcagaaatgttcatggtggggatgaacaaacaaagtg 13551839  T
Q  105 attgggtttcaagaatcatgtcaacacgatatgcacgagagggaggcactgattacttgtcaataagtatcttatcaatcttccagcctaaattttcaac 204  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13551840 attgggtttcaagaatcatgtcaacactatatgcacgagagggaggcactgattacttgtcaataagtatcttatcaatcttccagcctaaattttcaac 13551939  T
Q  205 tacttgttaacctctatcaaagaaggaatgaaggaaagaagaatgttacttatgcatggtttctttcaaaaatctttcaccaaggaaagctggttcagaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13551940 tacttgttaacctctatcaaagaaggaatgaaggaaagaagaatgttacttatgcatggtttctttcaaaaatctttcaccaaggaaagctggttcagaa 13552039  T
Q  305 gctacaacatgttgtatcgagtgactctagggagtataggcatcatccagaaaggatatgtaattacaactgatcaagagctagagataacctatgctca 404  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13552040 gctacaacatgttgtatcgagtgactctagggaatataggcatcatccagaaaggatatgtaattacaactgatcaagacctagagataacctatgctca 13552139  T
Q  405 gactgcatacttggatgatttcccctattttaaaagaagaccctccaaaagtcttggctgagttcgtctcccaacatttcaaggagactggagttgta-- 502  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||      
T  13552140 gactgcatacttggatgatttcccctatttcaaaagaagaccctccagaagtgttggctgagttcgtctcccaacatttcaaggagactggagttgtaat 13552239  T
Q  503 attcaatggatatgacccctatttcataatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatatctctactatatataaagaaaact 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  13552240 attcaatggatatgacccctatttcataatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatatctctattataggtaaagaaaact 13552339  T
Q  603 atccctttca 612  Q
    | || |||||    
T  13552340 acccttttca 13552349  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 612
Target Start/End: Original strand, 24062042 - 24062078
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||||||||||||||||||||||||||    
T  24062042 atatctatactatatataaagaaaactatccctttca 24062078  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 579
Target Start/End: Original strand, 12597074 - 12597123
Alignment:
Q  530 aatgaatctgcaatctagcaagctgatatggcaaggactcaagctgatat 579  Q
    ||||||||||||||| ||||| || ||||||||||||| |||||||||||    
T  12597074 aatgaatctgcaatccagcaaactaatatggcaaggacccaagctgatat 12597123  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 45022716 - 45022682
Alignment:
Q  578 atctctactatatataaagaaaactatccctttca 612  Q
    |||| ||||||||||||||||||||||||||||||    
T  45022716 atctatactatatataaagaaaactatccctttca 45022682  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 11321538 - 11321502
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  11321538 atatctatactatatataaagaaaactacccctttca 11321502  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 38804929 - 38804895
Alignment:
Q  578 atctctactatatataaagaaaactatccctttca 612  Q
    |||| ||||||||||||||||||||||||||||||    
T  38804929 atctatactatatataaagaaaactatccctttca 38804895  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 612
Target Start/End: Original strand, 32889137 - 32889166
Alignment:
Q  583 tactatatataaagaaaactatccctttca 612  Q
    ||||||||||||||||||||||||||||||    
T  32889137 tactatatataaagaaaactatccctttca 32889166  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Original strand, 32889011 - 32889047
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  32889011 atatctatactatagataaagaaaactatccctttca 32889047  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 612
Target Start/End: Complemental strand, 11974937 - 11974899
Alignment:
Q  574 tgatatctctactatatataaagaaaactatccctttca 612  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  11974937 tgatatctatactatatataaagaaaactacccctttca 11974899  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 610
Target Start/End: Complemental strand, 27866483 - 27866450
Alignment:
Q  577 tatctctactatatataaagaaaactatcccttt 610  Q
    ||||| ||||||||||||||||||||||||||||    
T  27866483 tatctatactatatataaagaaaactatcccttt 27866450  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Original strand, 3729297 - 3729333
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| |||||||||||||||||||||||| |||||    
T  3729297 atatctatactatatataaagaaaactatccatttca 3729333  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Original strand, 11333060 - 11333096
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  11333060 atatctatactatatataaagaaaactacccctttca 11333096  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 37144101 - 37144065
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  37144101 atatctatactatatataaagaaaactacccctttca 37144065  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Original strand, 38001256 - 38001292
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| |||||||||||||||||||| |||||||||    
T  38001256 atatctatactatatataaagaaaactgtccctttca 38001292  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 612
Target Start/End: Original strand, 28096097 - 28096131
Alignment:
Q  578 atctctactatatataaagaaaactatccctttca 612  Q
    |||| ||||||||||||||||||||||||||||||    
T  28096097 atctatactatatataaagaaaactatccctttca 28096131  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 612
Target Start/End: Original strand, 22102179 - 22102208
Alignment:
Q  583 tactatatataaagaaaactatccctttca 612  Q
    ||||||||||||||||||||||||||||||    
T  22102179 tactatatataaagaaaactatccctttca 22102208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 3422898 - 3422862
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| |||||||||||||||||||| |||||||||    
T  3422898 atatctatactatatataaagaaaactgtccctttca 3422862  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 7116234 - 7116198
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  7116234 atatctatactatatataaagaaaactacccctttca 7116198  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 42897123 - 42897087
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  42897123 atatctatactatatataaagaaaactacccctttca 42897087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 38938860 - 38938824
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  38938860 atatctatactatatataaagaaaactacccctttca 38938824  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Original strand, 8007192 - 8007228
Alignment:
Q  576 atatctctactatatataaagaaaactatccctttca 612  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  8007192 atatctatactatacataaagaaaactatccctttca 8007228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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