View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_67 (Length: 282)
Name: NF17903_low_67
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 35913556 - 35913301
Alignment:
| Q |
20 |
acttccagtagagtatgctaaaaaatgtgtaagtgtccttccgcctacgtgtctccacaataaactctacataaggtaacccctttttctaaggttccat |
119 |
Q |
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| T |
35913556 |
acttccagtagagtatgctaaaaaatttgtaagtggccttccgcctacgtgtctctacaataaactctacataaggtaacccctttttctaaggttccat |
35913457 |
T |
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| Q |
120 |
gtctagcctatagttgtcagttttagtaatcttttattattttcctagatgcttgattactcatagtaaccttgttatcttaattttagttgttatatat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35913456 |
gtctagcctatagttgtcagttttagtaatcttttattattttcctagatgcttgattactcatagtaaccttgttatcttaattttagttgttatatat |
35913357 |
T |
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| Q |
220 |
aatacaaatcaagatacaagtattccttattaatca-cccttgctaacattcatat |
274 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35913356 |
aatacacatcaagatacaagtattccttattaatcaccccttgctaacattcatat |
35913301 |
T |
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