View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_70 (Length: 275)
Name: NF17903_low_70
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 8441967 - 8442208
Alignment:
| Q |
16 |
cttgtaacttaagtggtggcattaaggtgttcaaacgtgctttgatgtgtgcaaaaaacaagtatatagtgaaggcctattttgggtcctcacgaattcc |
115 |
Q |
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| T |
8441967 |
cttgtaacttaagtggtggcattaaggtgttctaacgtgttttgatgtgtgtaaaaaaaaagtatagagttaaggcccattttgggtcctgacaaatttt |
8442066 |
T |
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| Q |
116 |
atagagcccaaattagtctatttagtccctatttttagtcctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagacaatttagtc |
215 |
Q |
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| T |
8442067 |
atagagcccaaattagtctatttggtccctatttttagtcctcaacaaataaaaagatcctatttagtcccttagaaaataaatttgagacaatttagtc |
8442166 |
T |
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| Q |
216 |
catagatcgttgtttatcatcgaaccaatgacgtgtagaact |
257 |
Q |
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| T |
8442167 |
ccatgatcattttttatcatcgaacctatgacgtgtagaact |
8442208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 8443442 - 8443592
Alignment:
| Q |
107 |
acgaattccatagagcccaaattagtctatttagtccctatttttagtcctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagac |
206 |
Q |
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| T |
8443442 |
acgaattccatagagcccaaattagtctatttagtccctatttttagtcctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagac |
8443541 |
T |
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| Q |
207 |
aatttagtccatagatcgttgtttatcatcgaaccaatgacgtgtagaact |
257 |
Q |
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| T |
8443542 |
aatttagtccatggatcgttgtttatcatcgaacctatgacgtgtagaact |
8443592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 35912018 - 35912074
Alignment:
| Q |
156 |
ctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagacaattta |
212 |
Q |
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| T |
35912018 |
ctcaacaaataaaaagactctatttagtctcttataaaataaaaccgagacagttta |
35912074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 35912811 - 35912753
Alignment:
| Q |
154 |
tcctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagacaattta |
212 |
Q |
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| T |
35912811 |
tcctcaacaaataaaaagaccctattgagttctttataaaattaaaccgagacaattta |
35912753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 33414279 - 33414220
Alignment:
| Q |
154 |
tcctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagacaatttag |
213 |
Q |
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| T |
33414279 |
tcctcaacaaatagaaagaccctatttagtttcttgtaaaattaaatcgagacaatttag |
33414220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 33008108 - 33008169
Alignment:
| Q |
154 |
tcctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagacaatttagtc |
215 |
Q |
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| T |
33008108 |
tcctcaacaaataaaaagatcatatttagtctcttataatataaaaccgatacaatttagtc |
33008169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 37663204 - 37663160
Alignment:
| Q |
151 |
tagtcctcaacaaataaaaagaccctatttagtcccttataaaat |
195 |
Q |
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| T |
37663204 |
tagtcatcaacaaataaaaagactctatttagtctcttataaaat |
37663160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 16982617 - 16982681
Alignment:
| Q |
150 |
ttagtcctcaacaaataaaaagaccctatttagtcccttataaaataaattcgagacaatttagt |
214 |
Q |
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| T |
16982617 |
ttagtcctcgacaaataaaaagatcgtatttaatcatttataaaattaaaccgagacaatttagt |
16982681 |
T |
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