View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_74 (Length: 264)
Name: NF17903_low_74
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_74 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 46640487 - 46640242
Alignment:
| Q |
19 |
tgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaa |
118 |
Q |
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| T |
46640487 |
tgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaa |
46640388 |
T |
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| Q |
119 |
agagctaagtctattaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcat |
218 |
Q |
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| T |
46640387 |
agagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcat |
46640288 |
T |
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| Q |
219 |
ctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgg |
264 |
Q |
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| T |
46640287 |
ctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgg |
46640242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 46642779 - 46642534
Alignment:
| Q |
19 |
tgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaa |
118 |
Q |
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| T |
46642779 |
tgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaa |
46642680 |
T |
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| Q |
119 |
agagctaagtctattaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcat |
218 |
Q |
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| T |
46642679 |
agagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcat |
46642580 |
T |
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| Q |
219 |
ctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgg |
264 |
Q |
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| T |
46642579 |
ctagtgacggtgcacaaatgatacctgtgtagttgcatacatttgg |
46642534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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