View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_77 (Length: 258)

Name: NF17903_low_77
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_77
NF17903_low_77
[»] chr3 (4 HSPs)
chr3 (19-248)||(26673067-26673296)
chr3 (181-229)||(4844536-4844584)
chr3 (181-229)||(4870232-4870280)
chr3 (188-228)||(7673279-7673319)
[»] chr7 (3 HSPs)
chr7 (178-231)||(28115889-28115942)
chr7 (178-218)||(33362632-33362672)
chr7 (185-229)||(23595736-23595780)
[»] chr4 (5 HSPs)
chr4 (185-231)||(21660167-21660213)
chr4 (185-231)||(21668931-21668977)
chr4 (177-226)||(759881-759930)
chr4 (185-229)||(11418227-11418271)
chr4 (183-215)||(47286558-47286590)
[»] chr5 (4 HSPs)
chr5 (182-229)||(14495830-14495877)
chr5 (182-247)||(636575-636643)
chr5 (185-226)||(24652875-24652916)
chr5 (185-229)||(1410684-1410728)
[»] chr8 (1 HSPs)
chr8 (185-229)||(35641926-35641970)
[»] chr2 (1 HSPs)
chr2 (185-217)||(35916093-35916125)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 26673067 - 26673296
Alignment:
Q  19 gttttgatgtggtcatgattaaccctggtacagcattgggccctttgattccaccaagaattaactcaagcatggctgtacttactggtgttctcaaagg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26673067 gttttgatgtggtcatgattaaccctggtacagcattgggccctttgattccaccaagaattaactcaagcatggctgtacttgctggtgttctcaaagg 26673166  T
Q  119 taaattaatcacaaactgtgcaaaatatttgagtataaggtttacatttcggtcagggaaattcatttgggttggtctggtggtattgacttgatatttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||  |||||| ||||| ||||||||||||||||| ||| |    
T  26673167 taaattaatcacaaactgtgcaaaatatttgagtataaggtttacattttggtcggagaaatctatttggattggtttggtggtattgacttgagattgg 26673266  T
Q  219 gaagtgtgctcttacgttcgattctctctg 248  Q
    ||||| |||||||| |||| ||||||||||    
T  26673267 gaagtatgctcttaggttcaattctctctg 26673296  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 4844584 - 4844536
Alignment:
Q  181 tcatttgggttggtctggtggtattgacttgatatttggaagtgtgctc 229  Q
    |||||||||||||||||||||||||||||||  || ||| |||||||||    
T  4844584 tcatttgggttggtctggtggtattgacttgggatctgggagtgtgctc 4844536  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 4870280 - 4870232
Alignment:
Q  181 tcatttgggttggtctggtggtattgacttgatatttggaagtgtgctc 229  Q
    |||||||||||||||||||||||||||||||  || ||| |||||||||    
T  4870280 tcatttgggttggtctggtggtattgacttgggatctgggagtgtgctc 4870232  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 7673279 - 7673319
Alignment:
Q  188 ggttggtctggtggtattgacttgatatttggaagtgtgct 228  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  7673279 ggttggtctggtggtattgacttgggatttggaagtgtgct 7673319  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 28115942 - 28115889
Alignment:
Q  178 aattcatttgggttggtctggtggtattgacttgatatttggaagtgtgctctt 231  Q
    ||||||||||||||||||||||||||||||||||| | || ||||| |||||||    
T  28115942 aattcatttgggttggtctggtggtattgacttgagactttgaagtatgctctt 28115889  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 33362632 - 33362672
Alignment:
Q  178 aattcatttgggttggtctggtggtattgacttgatatttg 218  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  33362632 aattcatttgggttggtatggtggtattgacttgagatttg 33362672  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 23595736 - 23595780
Alignment:
Q  185 ttgggttggtctggtggtattgacttgatatttggaagtgtgctc 229  Q
    |||||||||||||||||||||||||||| || | | |||||||||    
T  23595736 ttgggttggtctggtggtattgacttgagatctcggagtgtgctc 23595780  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 21660213 - 21660167
Alignment:
Q  185 ttgggttggtctggtggtattgacttgatatttggaagtgtgctctt 231  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||    
T  21660213 ttgggttggtctggtggtattgacttgagatctgggagtgtgctctt 21660167  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 21668977 - 21668931
Alignment:
Q  185 ttgggttggtctggtggtattgacttgatatttggaagtgtgctctt 231  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||    
T  21668977 ttgggttggtctggtggtattgacttgagatctgggagtgtgctctt 21668931  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 759930 - 759881
Alignment:
Q  177 aaattcatttgggttggtctggtggtattgacttgatatttggaagtgtg 226  Q
    |||||||||| ||||||| |||| |||||||||||| ||||| |||||||    
T  759930 aaattcatttaggttggtatggtagtattgacttgagatttgaaagtgtg 759881  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 11418227 - 11418271
Alignment:
Q  185 ttgggttggtctggtggtattgacttgatatttggaagtgtgctc 229  Q
    |||||||||||| ||| ||||||||||  ||||||||||||||||    
T  11418227 ttgggttggtctagtgatattgacttgggatttggaagtgtgctc 11418271  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 47286558 - 47286590
Alignment:
Q  183 atttgggttggtctggtggtattgacttgatat 215  Q
    ||||||||||||||||||||||||| |||||||    
T  47286558 atttgggttggtctggtggtattgaattgatat 47286590  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 14495877 - 14495830
Alignment:
Q  182 catttgggttggtctggtggtattgacttgatatttggaagtgtgctc 229  Q
    ||||||||||||||||||||||||||||||  || ||| |||||||||    
T  14495877 catttgggttggtctggtggtattgacttgggatctgggagtgtgctc 14495830  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 636643 - 636575
Alignment:
Q  182 catttgggttggtctggtggtattgacttgatatttggaagtgtgctctt---acgttcgattctctct 247  Q
    ||||||| ||||| || |||||||||||||| || |||||||||||||||   | ||||||||||||||    
T  636643 catttggattggtatgatggtattgacttgagatctggaagtgtgctcttttcaggttcgattctctct 636575  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 24652875 - 24652916
Alignment:
Q  185 ttgggttggtctggtggtattgacttgatatttggaagtgtg 226  Q
    |||| ||||||||||||||||||||||| |||||| ||||||    
T  24652875 ttggattggtctggtggtattgacttgagatttgggagtgtg 24652916  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 1410728 - 1410684
Alignment:
Q  185 ttgggttggtctggtggtattgacttgatatttggaagtgtgctc 229  Q
    |||||||||||||||||||||||||||  || ||| |||||||||    
T  1410728 ttgggttggtctggtggtattgacttgggatatgggagtgtgctc 1410684  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 35641970 - 35641926
Alignment:
Q  185 ttgggttggtctggtggtattgacttgatatttggaagtgtgctc 229  Q
    |||||||||||||||||||| | ||||| |||||| |||||||||    
T  35641970 ttgggttggtctggtggtatcggcttgagatttgggagtgtgctc 35641926  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 35916093 - 35916125
Alignment:
Q  185 ttgggttggtctggtggtattgacttgatattt 217  Q
    |||||||||||||||||||||||||||| ||||    
T  35916093 ttgggttggtctggtggtattgacttgagattt 35916125  T

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