View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_80 (Length: 251)
Name: NF17903_low_80
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 49517402 - 49517554
Alignment:
| Q |
1 |
ctgactagttgcaaactctctttataacatgcttaagtgtgcgaataacttgcagtattgatgtatcttgtacatgtgtctattttgttgattgttacan |
100 |
Q |
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| T |
49517402 |
ctgactagttgcaaactctctttataacatgcttaagtgtgcgaataacttgcagtattgatgtatcttgtacatgtgtctattttgttgattgttaca- |
49517500 |
T |
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| Q |
101 |
nnnnnnnnnnnngagaaattgttacatataaatcgggaagcattcatatactca |
154 |
Q |
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| T |
49517501 |
ttttttttttttgagaaattgttacatataaatcgggaagcattcatatactca |
49517554 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 27746843 - 27746895
Alignment:
| Q |
45 |
ataacttgcagtattgatgtatcttgtacatgtgtctattttgttgattgtta |
97 |
Q |
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| T |
27746843 |
ataacttgcagtatcgatgtatcctgtgcatgtgtctattttgttaattgtta |
27746895 |
T |
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