View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_81 (Length: 251)
Name: NF17903_low_81
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 42969910 - 42970145
Alignment:
| Q |
1 |
ccaattattggtatggatgctaaaagtgttaacaagtttaagagccctatcactgtgttactgaacctatacatttctcttactcttaattgctctctaa |
100 |
Q |
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| T |
42969910 |
ccaattattggtatggatgctaaaagtgttaacaagtttaagagccctatcactgtgttactgaacctatacatttctcttactcttaattgctctctaa |
42970009 |
T |
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| Q |
101 |
agnnnnnnnncctatatttgtttcttcttgtggtgtctttatatctatttataaaagggagagagaggtactcagtttgaatggtgtattcagaaacttt |
200 |
Q |
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| T |
42970010 |
agttttttttcctatatttgtttcttcttgtggtgtctttatatctatttataaaagggagagagaggtacttagtttgaatggtgtattcagaaacttt |
42970109 |
T |
|
| Q |
201 |
agttcaagtattgtgaaaatgagtgactgatcatga |
236 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
42970110 |
agttcaagtattgtgaaaatgagtgaatgatcatga |
42970145 |
T |
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