View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_83 (Length: 250)
Name: NF17903_low_83
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 51935057 - 51935272
Alignment:
| Q |
22 |
tccagtacctaagagatcacaaaattaaccagattaatagaaactcaatactacacgcaaacatcaattgataaaaggtagtcatcaaacttcacctgat |
121 |
Q |
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| T |
51935057 |
tccagtacctaagagatcacaaaattaaccagattaatagaaactcaatactacacgcaaacatcaattgataaaaggtagttatcaaacttcacctgat |
51935156 |
T |
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| Q |
122 |
aatccaaaaaagagcgcaacagcgccatttttgcccatattacatccagaatgtagggagagaatattgcgcttcggcatgaggtagtgcattaaactaa |
221 |
Q |
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| T |
51935157 |
aatccaaaaaagagcgcaacatcgccatttttgcccatattacatccagaatgtagggagagaatattgcgcttcggcatgaggtagtgcattaaactaa |
51935256 |
T |
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| Q |
222 |
agagacctttcttcat |
237 |
Q |
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|||||||||||||||| |
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| T |
51935257 |
agagacctttcttcat |
51935272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 12995848 - 12995970
Alignment:
| Q |
115 |
acctgataatccaaaaaagagcgcaacagcgccatttttgcccatattacatccagaatgtagggagagaatattgcgcttcggcatgaggtagtgcatt |
214 |
Q |
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| T |
12995848 |
acctgagagtccaaagaagagagcaacatcgccacctttgcccatattagaaccagagtgtaaggagagaatttggcgcttaggcatgagataatgcatg |
12995947 |
T |
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| Q |
215 |
aaactaaagagacctttcttcat |
237 |
Q |
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| T |
12995948 |
acactgaaaagacctttcttcat |
12995970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 13070501 - 13070623
Alignment:
| Q |
115 |
acctgataatccaaaaaagagcgcaacagcgccatttttgcccatattacatccagaatgtagggagagaatattgcgcttcggcatgaggtagtgcatt |
214 |
Q |
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| T |
13070501 |
acctgagagtccaaagaagagagcaacatcgccacctttgcccatattagaaccagagtgtaaggagagaatttggcgcttaggcatgagataatgcatg |
13070600 |
T |
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| Q |
215 |
aaactaaagagacctttcttcat |
237 |
Q |
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| T |
13070601 |
acactgaaaagacctttcttcat |
13070623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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