View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_85 (Length: 249)
Name: NF17903_low_85
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_85 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 3019938 - 3020136
Alignment:
| Q |
26 |
aagaaaccaactaaatgc-acgtcatagttgatccttatatttt-tctttgttgaattgtttggattatttgaatccaaacaatgcaaattatatggtct |
123 |
Q |
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| T |
3019938 |
aagaaaccaactagatgccatgtcatagttaatcctaatattttttctttgttgaattgtttggattatttgaatccaaacaatgcaaattatatggtct |
3020037 |
T |
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| Q |
124 |
catcgtcccatataactatacgcattcttattgtgtcacaaagtggaattgttttaaaatgtacaatctgcactaattgcacatttagttgttgtgctt |
222 |
Q |
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| T |
3020038 |
catcgtcccatatcactatatgcattcctattgtgtcacaaagtggaattgttttaaaatatacaatctgcactaattgcacatttagttgttgtgctt |
3020136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 3021589 - 3021755
Alignment:
| Q |
24 |
ccaagaaaccaactaaatgcacgtcatagttgatccttatatttttctttgttgaattgtttggattatttgaatccaaacaatgcaaattatatggtct |
123 |
Q |
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|||||| |||||| | |||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| | ||||||||||||| |||| |
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| T |
3021589 |
ccaagataccaaccagttgcaagtcatagttgatccttata-ttttctcatttgaattgtttggattatttgaat-caagcgatgcaaattatatagtct |
3021686 |
T |
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| Q |
124 |
catcgtcccatataactatacgcattcttattgtgtcacaaagtggaattgttttaaaatgtacaatctgcac |
196 |
Q |
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||| ||||||||| ||| ||| | || |||||| | ||||||||| |||| | ||||||||||| ||||| |
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| T |
3021687 |
cattgtcccatatcact----gcagttttgttgtgtgataaagtggaaatgttctgaaatgtacaatttgcac |
3021755 |
T |
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