View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_87 (Length: 247)
Name: NF17903_low_87
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_87 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 10465437 - 10465658
Alignment:
| Q |
4 |
ggagtagcataggaggcgctgcattgaagacctagagaaatgtgccatgatcatgatcatg------gtggtagcgtgagtgtttttgatagaatatgag |
97 |
Q |
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| T |
10465437 |
ggagtagtagaggaggcgctgcattgaagacctagagaaatgtgccatgatcatgatcatgatcatggtggtagcatgagggtttttga----------g |
10465526 |
T |
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| Q |
98 |
gctagctagctaaaacccttgggggtttatcatcatcgtcatcatcttccttactgtactacactttgatgattcattttcccgcttcttcttcattctt |
197 |
Q |
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| T |
10465527 |
gctagctagctaaaacccttgggggtttaa-atcgta-tcatcatcttccgtactgtactacactttgatgattcattttcccgcttcttcttcattctt |
10465624 |
T |
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| Q |
198 |
tctgtcgttttcttcaaacgctgccgtatacaac |
231 |
Q |
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| T |
10465625 |
tctgtcgttttcttcaaacgctgccgtatacaac |
10465658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 10509576 - 10509652
Alignment:
| Q |
153 |
gtactacactttgatgattcattttcccgcttcttcttcattctttctgtcgttttct-tcaaacgctgccgtatacaac |
231 |
Q |
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| T |
10509576 |
gtactacactttgatgaatcattttcccg---cttcttcattctttctgtcgttttctgtcaaacgctggcgtatccaac |
10509652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 10520531 - 10520592
Alignment:
| Q |
171 |
tcattttcccgcttcttcttcattctttctgtcgttttct-tcaaacgctgccgtatacaac |
231 |
Q |
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| T |
10520531 |
tcattttcccgcttcttcttcattctttctgtcgtcttctgtcaaacgctgccgtatccaac |
10520592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 10477012 - 10477068
Alignment:
| Q |
176 |
ttcccgcttcttcttcattctttctgtcgttttct-tcaaacgctgccgtatacaac |
231 |
Q |
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| T |
10477012 |
ttcccgcttcttcttcattctttccgtcgttttctgtcaaacgctgccgtatccaac |
10477068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 7462271 - 7462243
Alignment:
| Q |
169 |
attcattttcccgcttcttcttcattctt |
197 |
Q |
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| T |
7462271 |
attcattttcccgcttcttcttcattctt |
7462243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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