View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17903_low_90 (Length: 240)
Name: NF17903_low_90
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 37595940 - 37595732
Alignment:
| Q |
1 |
atcaagctattgaaccaagggaacttcagaaaacatctacacataatgtttttcaggtttgttaaattcacattttctactacactaggtcaaatataga |
100 |
Q |
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| T |
37595940 |
atcaagctattgaaccaagggaacttcagaaaacatctacacataatgtttttcaggtttgttaaattcacattttctactacactaggtcaaatataga |
37595841 |
T |
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| Q |
101 |
gcaaatttcannnnnnncatctacattatatatgtagcatggctttaaattgtggttcaatttcgctccaaaccttttgatgttgtagagacttcaaaac |
200 |
Q |
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| T |
37595840 |
gcaaatttcatttttttcatctacattatatatgtagcatggctttaaattgtggttcaatttcgctccaaaccttttgatgttgtagagacttcaaaac |
37595741 |
T |
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| Q |
201 |
cttttaggt |
209 |
Q |
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||||||||| |
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| T |
37595740 |
cttttaggt |
37595732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 37595715 - 37595685
Alignment:
| Q |
210 |
aaaccatgatataatatatgtaggttgaatt |
240 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37595715 |
aaaccatgatataatatatgtaggttgaatt |
37595685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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