View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17903_low_91 (Length: 238)
Name: NF17903_low_91
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17903_low_91 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 1739294 - 1739495
Alignment:
| Q |
20 |
gaattgacaaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatannnnnnnactctttatggagttatttgtattttttagaatat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1739294 |
gaattgacaaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatatttttttactctttatggagttatttgtattttttagaatat |
1739393 |
T |
|
| Q |
120 |
gtttagatatatagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgt |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1739394 |
gtttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgt |
1739493 |
T |
|
| Q |
220 |
cc |
221 |
Q |
| |
|
|| |
|
|
| T |
1739494 |
cc |
1739495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 1717925 - 1718025
Alignment:
| Q |
121 |
tttagatatatagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgtc |
220 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
1717925 |
tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc |
1718024 |
T |
|
| Q |
221 |
c |
221 |
Q |
| |
|
| |
|
|
| T |
1718025 |
c |
1718025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 1754878 - 1754957
Alignment:
| Q |
140 |
aaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgt |
219 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||| || |||||||| ||| |||||||| || ||||||||||||| |
|
|
| T |
1754878 |
aacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgt |
1754957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 1749254 - 1749342
Alignment:
| Q |
131 |
tagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgt |
219 |
Q |
| |
|
|||||||| |||| || ||||||||| || || |||| |||||||| || ||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
1749254 |
tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgt |
1749342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University