View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17903_low_94 (Length: 235)

Name: NF17903_low_94
Description: NF17903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17903_low_94
NF17903_low_94
[»] chr2 (3 HSPs)
chr2 (107-222)||(6348873-6348988)
chr2 (171-222)||(40913143-40913194)
chr2 (1-29)||(6349001-6349029)
[»] chr8 (3 HSPs)
chr8 (107-215)||(1835162-1835273)
chr8 (107-173)||(1879013-1879082)
chr8 (179-215)||(1879078-1879114)
[»] chr7 (1 HSPs)
chr7 (107-208)||(47190229-47190330)
[»] chr4 (2 HSPs)
chr4 (142-222)||(5812720-5812802)
chr4 (174-210)||(17512993-17513029)
[»] chr1 (2 HSPs)
chr1 (109-222)||(21263830-21263940)
chr1 (133-222)||(421546-421642)
[»] chr3 (2 HSPs)
chr3 (142-221)||(29896018-29896102)
chr3 (174-222)||(47870344-47870392)
[»] scaffold0312 (1 HSPs)
scaffold0312 (133-222)||(8930-9026)
[»] chr5 (1 HSPs)
chr5 (174-222)||(13887394-13887443)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 6348988 - 6348873
Alignment:
Q  107 gaatttgtgcgatggggaagacgaatgaattggtgtatccaatttagattataagttttaagaataaaaaataataacaaaattgtttaattttgattta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6348988 gaatttgtgcgatggggaagacgaatgaattggtgtatccaatttagattataagttttaagaataaaaaataataacaaaattgttgaattttgattta 6348889  T
Q  207 attaaggacccaattg 222  Q
    ||||||||||||||||    
T  6348888 attaaggacccaattg 6348873  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 40913143 - 40913194
Alignment:
Q  171 taaaaaataataacaaaattgtttaattttgatttaattaaggacccaattg 222  Q
    ||||||||||||| |||| | ||||||||||||||||| |||||| ||||||    
T  40913143 taaaaaataataaaaaaaatatttaattttgatttaatcaaggacacaattg 40913194  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6349029 - 6349001
Alignment:
Q  1 gagagagacgcaaggtcgtatcagtttat 29  Q
    |||||||||||||||||||||||||||||    
T  6349029 gagagagacgcaaggtcgtatcagtttat 6349001  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 1835162 - 1835273
Alignment:
Q  107 gaatttgtgcgatggggaagacg-aatgaattggt-gtatccaatttagatt-ataagttttaagaataaaaaataataacaaaattgtttaattttgat 203  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  1835162 gaatttgtgcgatggggaagatggaatgaattggttgtatccaatttagatgcataagttttaagaataaaaaaaaataacaaaaatgtttaattttgat 1835261  T
Q  204 ttaattaaggac 215  Q
    ||||| ||||||    
T  1835262 ttaatcaaggac 1835273  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 1879013 - 1879082
Alignment:
Q  107 gaatttgtgcgatggggaaga-cgaatgaattgg-tgtatccaatttagat-tataagttttaagaataa 173  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||||||||  |||||||||||||||||    
T  1879013 gaatttgtgcgatggggaagatggaatgaattggttgtatccaatttagatgcataagttttaagaataa 1879082  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 1879078 - 1879114
Alignment:
Q  179 aataacaaaattgtttaattttgatttaattaaggac 215  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  1879078 aataacaaaaatgtttaattttgatttaatcaaggac 1879114  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 47190330 - 47190229
Alignment:
Q  107 gaatttgtgcgatggggaagacg-aatgaattggt-gtatccaatttagatt-ataagttttaagaataaaaaataataacaaaattgtttaattttgat 203  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||||||  |||| ||||||||| |||||||||   ||||| ||||||||||||||    
T  47190330 gaatttgtgcgatggggaagatggaatgaattggtcgtatccaatttagatgcataaattttaagaaaaaaaaataa---caaaaatgtttaattttgat 47190234  T
Q  204 ttaat 208  Q
    |||||    
T  47190233 ttaat 47190229  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 5812802 - 5812720
Alignment:
Q  142 tatccaatttagatt-ataagttttaagaataaaaaa-taataacaaaattgtttaattttgatttaattaaggacccaattg 222  Q
    ||||||||||||||  ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| || ||| ||||||    
T  5812802 tatccaatttagatgcataagtttttagaataaaaaaataataacaaaaatgtttaattttgatttaatcaatgacacaattg 5812720  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 17512993 - 17513029
Alignment:
Q  174 aaaataataacaaaattgtttaattttgatttaatta 210  Q
    |||||||||| |||| |||||||||||||||||||||    
T  17512993 aaaataataataaaaatgtttaattttgatttaatta 17513029  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 21263830 - 21263940
Alignment:
Q  109 atttgtgcgatggggaagacg-aatgaattggt-gtatccaatttagatt-ataagttttaagaataaaaaataataacaaaattgtttaattttgattt 205  Q
    |||||| |||||||||||| | ||||||||||| |||||||||||||||  |||||||||||||| ||||      ||||||| ||||||||||||||||    
T  21263830 atttgttcgatggggaagatggaatgaattggtcgtatccaatttagatgcataagttttaagaaaaaaa------aacaaaaatgtttaattttgattt 21263923  T
Q  206 aattaaggacccaattg 222  Q
    ||| |||||| ||||||    
T  21263924 aatcaaggacacaattg 21263940  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 421642 - 421546
Alignment:
Q  133 gaattggt-gtatccaatttagatt-ataagttttaagaataaaaaataa-----taacaaaattgtttaattttgatttaattaaggacccaattg 222  Q
    |||||||| |||||||||||||||  ||||||||||||| ||||||||||     ||| |||| ||||||||||||||||||| |||||| ||||||    
T  421642 gaattggtagtatccaatttagatgcataagttttaagattaaaaaataaaataataataaaaatgtttaattttgatttaatcaaggacacaattg 421546  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 29896102 - 29896018
Alignment:
Q  142 tatccaatttagatt-ataagttttaagaataaaaa----ataataacaaaattgtttaattttgatttaattaaggacccaatt 221  Q
    ||||||||||||||  ||||||||||||||||||||    | ||||| |||| ||||||||||||||||||| ||||||||||||    
T  29896102 tatccaatttagatgcataagttttaagaataaaaagaaaaaaataataaaaatgtttaattttgatttaatcaaggacccaatt 29896018  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 47870392 - 47870344
Alignment:
Q  174 aaaataataacaaaattgtttaattttgatttaattaaggacccaattg 222  Q
    |||||||||| |||| ||||| ||||||||||||| |||||| ||||||    
T  47870392 aaaataataaaaaaaatgtttgattttgatttaatcaaggactcaattg 47870344  T

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Target: scaffold0312 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 8930 - 9026
Alignment:
Q  133 gaattggt-gtatccaatttagatt-ataagttttaagaataaaaaataa-----taacaaaattgtttaattttgatttaattaaggacccaattg 222  Q
    |||||||| |||||||||||||||  ||||||||||||| ||||||||||     ||| |||| ||||||||||||||||||| |||||| ||||||    
T  8930 gaattggtagtatccaatttagatgcataagttttaagattaaaaaataaaataataataaaaatgtttaattttgatttaatcaaggacacaattg 9026  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 13887443 - 13887394
Alignment:
Q  174 aaaataataa-caaaattgtttaattttgatttaattaaggacccaattg 222  Q
    |||||||||| ||||| ||||||||||||||||||| |||||| ||||||    
T  13887443 aaaataataaacaaaaatgtttaattttgatttaatcaaggacacaattg 13887394  T

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