View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17904_high_1 (Length: 510)
Name: NF17904_high_1
Description: NF17904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17904_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 13580959 - 13580470
Alignment:
| Q |
1 |
aggtcgaggcagttgggactggaacgtcaaagcacagctgacattacgaatgtgctgatgacacctctcaacacgaccattctgctgtggcatttcctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13580959 |
aggtcgaggcagttgggactggaacgtcaaagcacagctgacattacgaatgtgctgatgacacctctcaacacgaccattctgctgtggcatttcctca |
13580860 |
T |
|
| Q |
101 |
cggctagtttgataaacgatgcctttggaggcatgaaactgttttaaggaaaaacgcagggccattctcactgtgaatggccttgattcgcttggaaaat |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
13580859 |
cggctagtttgataaacaatgcctttggaggcatgaaactgttttaaggaaaaacgcagggccattatcactgtgaatgggcttgattcgcttggaaaat |
13580760 |
T |
|
| Q |
201 |
tgtgtttcaaccaagttgtaaaagctactgatacaggaatgaatttcagatgtagcacgcattataacaacccaaatgaaacaagtaatagcaagtatga |
300 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
13580759 |
cacgtttctaccaagttgtaaaagataccgatacaggactgaatttcagatgtagcacgcattataaccacccaaatgaagcaagtaatagcgagtatga |
13580660 |
T |
|
| Q |
301 |
tcagccaagatagcaaggaaatttttaaaaccatgaaaaggagcaattgcatatggacccgaaatatc-atatgaaccagatgaaaaggagcagttgcat |
399 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
13580659 |
tcagccaaaatagcaaggaaatatttaaaaccatgaaaaggagtaattgcatatggacctgaaatatcaacatgaaccagatgaaaaggagcagttgcat |
13580560 |
T |
|
| Q |
400 |
aactagacaaatggaagatattacaagcagctgtgcaaggagcacggataaaatcgtacaatttattcactttcaacaatctgtcatgag |
489 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
13580559 |
aactagacaaatggcagatattacaagcagccatgcaaggagcacagataaaatcatacaatttattcacgttcaacaatctgtaatgag |
13580470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University