View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17904_high_2 (Length: 503)
Name: NF17904_high_2
Description: NF17904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17904_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Original strand, 39055426 - 39055899
Alignment:
| Q |
13 |
aatattcaaaatgataatatactgaaaactatttgacgcttgagtctgatttatttctcgttatagcagtttgtatatcaatttaaaatataaaaatctt |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39055426 |
aatattcaaaatgatcatatactgaaaactatttgacgcttgagtctgatttatttctcgttatagcagtttgtatatcaatttaaaatataaaaatctt |
39055525 |
T |
|
| Q |
113 |
agtcaattgtacattagaaattaatcttctcaatatgttatgttacagggatattaaacctgataacttattacttgataaatatggacacttgaaacta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39055526 |
agtcaattgtacattagaaattaatcttctcaatatgttatgatacagggatattaaacctgataacttattacttgataaatatggacacttgaaacta |
39055625 |
T |
|
| Q |
213 |
tcggattttggactatgtaaaccgttagactgtagtgtacttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39055626 |
tcggattttggactatgtaaaccgttagactgtagtgtacttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatc |
39055725 |
T |
|
| Q |
313 |
gtgcatttccgaaacgtacacaacaagaacagttggaaaactggcagaaaaataggaggacacttgtaagttcatttctatcaagtcgtggtcactgtta |
412 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39055726 |
gtgcatttccaaaacgtacacaacaagaacagttggaaaactggcagaaaaataggaggacacttgtaagttcatttctatcaagtcgtggtcactgtta |
39055825 |
T |
|
| Q |
413 |
tatttattacaattactgtgacaatatgtaattatgaatattgacactctatgatcaattgagtttctcttttt |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39055826 |
tatttattacaattactgtgacaatatgtaattatgaatattgacactctatgatcaattgagtttctcttttt |
39055899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 153 - 384
Target Start/End: Complemental strand, 30393849 - 30393618
Alignment:
| Q |
153 |
tgttacagggatattaaacctgataacttattacttgataaatatggacacttgaaactatcggattttggactatgtaaaccgttagactgtagtgtac |
252 |
Q |
| |
|
|||| ||||||||| || ||||| |||||||||||||||| |||||||||| ||| ||| || || |||||||| |||||||| ||||| |||||| | |
|
|
| T |
30393849 |
tgttgcagggatatcaagcctgacaacttattacttgatagatatggacacctgagactgtctgactttggactttgtaaaccattagattgtagtacgc |
30393750 |
T |
|
| Q |
253 |
ttgaagaatcagacttttctattggccagaatgcaaatggaacaacacaaaatgatgatcgtgcatttccgaaacgtacacaacaagaacagttggaaaa |
352 |
Q |
| |
|
|||||||| || || ||| | || ||||||| |||||| | ||||| ||||| || ||| || ||| ||||| |||||||||||||| || |||| |
|
|
| T |
30393749 |
ttgaagaaaaggatttctctgtgggtcagaatgtgaatggatctacacagaatgaggagcgttcagctccaaaacgcacacaacaagaacaactgcaaaa |
30393650 |
T |
|
| Q |
353 |
ctggcagaaaaataggaggacacttgtaagtt |
384 |
Q |
| |
|
|||||| || || |||||||| |||||||||| |
|
|
| T |
30393649 |
ctggcaaaagaacaggaggacgcttgtaagtt |
30393618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University