View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17904_high_4 (Length: 470)
Name: NF17904_high_4
Description: NF17904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17904_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 145 - 457
Target Start/End: Original strand, 26278560 - 26278872
Alignment:
| Q |
145 |
ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatttgattagcttgagtatggagggagaattttgattgaagttgtgttt |
244 |
Q |
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| T |
26278560 |
ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatttgattagcttgagtatggagggagaattttgattgaagtagtgttt |
26278659 |
T |
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| Q |
245 |
tgaaagaatcagtaaacgattgttgctattctggaataaaccagaacgctgcggcaattaaccgtcgtttggggtgagcaatagttaactgccgttgagt |
344 |
Q |
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| T |
26278660 |
tgaaagaatcagttaacggctgttgctattctggaataaaccaaaacgctgcggcaattaaccgtcgtttggggtgagcaatagttaactgccgttgagt |
26278759 |
T |
|
| Q |
345 |
tcaattaggtaattttggggtgttaatgcaattctaaagttagaagaacaattttcctgatacaaaggggcagatatacagttggctttgaagcccataa |
444 |
Q |
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| T |
26278760 |
tcaattaggtaattttggggtgttaatgcaattctaaagttagaagaacaattttcctgatacaaaggggcagatatacagttggctttgaagcccatag |
26278859 |
T |
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| Q |
445 |
cccgacctttgct |
457 |
Q |
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| T |
26278860 |
cccgacctttgct |
26278872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 26278391 - 26278505
Alignment:
| Q |
1 |
tgcacttaatcttactcttatcaacggtcagagttcaaacatgtaagcatttgatcattaactaccnnnnnnnctgacaatttcataaaccctaaaaact |
100 |
Q |
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| T |
26278391 |
tgcacttaatcttactcttattaacagtcacagttcaaacatgtaagcatttgatcattaactgcc----aaactgacaatttcataaaccctaaaaact |
26278486 |
T |
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| Q |
101 |
aacacatgacaactttaaa |
119 |
Q |
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| T |
26278487 |
aacacatgacaactttaaa |
26278505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 25239667 - 25239614
Alignment:
| Q |
145 |
ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt |
198 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25239667 |
ttacttgtagttgaggttgaagttgaacttgatttgcttgaagttgaagaaatt |
25239614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 27404239 - 27404186
Alignment:
| Q |
145 |
ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt |
198 |
Q |
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||||||||||||||||| ||||| || |||||||| |||||||||| |||||| |
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| T |
27404239 |
ttacttgtagttgaggtagaagttcaagttgatttgtttgaagttgaggaaatt |
27404186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 35480106 - 35480159
Alignment:
| Q |
145 |
ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt |
198 |
Q |
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|||||||||||||||||| || |||||| ||||||| ||||||||||||||||| |
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| T |
35480106 |
ttacttgtagttgaggttgaaattgaacatgatttgtttgaagttgaagaaatt |
35480159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 18884762 - 18884815
Alignment:
| Q |
145 |
ttacttgtagttgaggttaaagttgaacttgatttgcttgaagttgaagaaatt |
198 |
Q |
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|||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||| |
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| T |
18884762 |
ttacttgtggttgaagttgaagttgaacttgattggcttgaagttgaagaaatt |
18884815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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