View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17904_low_11 (Length: 234)
Name: NF17904_low_11
Description: NF17904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17904_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 92 - 224
Target Start/End: Complemental strand, 7675903 - 7675772
Alignment:
| Q |
92 |
ccaattaaaagtgtttgaatttcaacatgtaacacgttcgaccgacctacactaacataatttcaaaaataccaaagcaaaagtttccctcatgatttct |
191 |
Q |
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| T |
7675903 |
ccaattaaaagtgtttgaatttcagcatgtaacacgttcgattgaccta-actcccataatttcataaataccaaagcaaaagtttccctcatgatttct |
7675805 |
T |
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| Q |
192 |
cactaaaccccccaaaccatgatttcctatatt |
224 |
Q |
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| T |
7675804 |
cactaaaccccccaaaccatgatttcctatatt |
7675772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 7676017 - 7675937
Alignment:
| Q |
13 |
atattagcatagtggtaatatcgatgcgttcctgcagtcaatagttggaccatgtaaaatgaatatgaataacaaattacc |
93 |
Q |
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| T |
7676017 |
atattaacatagtggtaatatcgatgcgttcccgcagtcaatagttggaccatgtgaaatgaatatgaataacaaattacc |
7675937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 3391991 - 3391945
Alignment:
| Q |
171 |
aaagtttccctcatgatttctcactaaaccccccaaaccatgatttcc |
218 |
Q |
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| T |
3391991 |
aaagtttccctcatgatttctcactaaatccctc-aaccatgatttcc |
3391945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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