View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17904_low_12 (Length: 227)
Name: NF17904_low_12
Description: NF17904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17904_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 10047153 - 10046939
Alignment:
| Q |
1 |
ttcttcccttataagcatcatagagagcactgtcaccacattcttctcaagccaccttctaattggtctagcaccgtacacctacacaacaataaaacaa |
100 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10047153 |
ttcttcccttataagcatcatagatagctctgtcaccacattcttctcaagccacca---aattggtctagcaccgtacacctacacaacaataaaacat |
10047057 |
T |
|
| Q |
101 |
agttagtcgcattttttgtttaagaaaatgattaagatgatgattatataagagcacttacaggatcatagctttcagcaagtatataatctagtgctgg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10047056 |
agttagtcacattttttgtttaagaaaatgattaagattatgattatttaagagcacttacgggatcatagctttcagcaagtatataatctagtgctgg |
10046957 |
T |
|
| Q |
201 |
atcagtaactgcctatgc |
218 |
Q |
| |
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||||||||||||| |||| |
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| T |
10046956 |
atcagtaactgccaatgc |
10046939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 38708657 - 38708549
Alignment:
| Q |
110 |
cattttttgtttaagaaaatgattaagatgatgattatataagagcacttacaggatcatagctttcagcaagtatataa-----tctagtgctggatca |
204 |
Q |
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|||||||| | |||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38708657 |
cattttttctataagaaaatgattaagatgatgattatagaataacacttacaggatcatagctttcagcaagtatataatctaatctagtgctggatct |
38708558 |
T |
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| Q |
205 |
gtaactgcc |
213 |
Q |
| |
|
||||||||| |
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| T |
38708557 |
gtaactgcc |
38708549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 38709084 - 38709010
Alignment:
| Q |
33 |
tcaccacattcttctcaagccaccttctaattggtctagcaccgtacacctacacaacaataaaacaaagttagt |
107 |
Q |
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| T |
38709084 |
tcaccacattcttctcaagccaccttctaattggtctagcaccatacacctacacaataatataacatagttagt |
38709010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 739662 - 739747
Alignment:
| Q |
1 |
ttcttcccttataagcatcatagagagcactgtcaccacattcttctcaagccaccttctaattggtctagcaccgtacacctaca |
86 |
Q |
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||||||||||||||||||| |||| ||| ||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
739662 |
ttcttcccttataagcatcctagacagctctgtcactaccttcttctcaagccaccttctaattgatctagcaccatacacctaca |
739747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 741812 - 741885
Alignment:
| Q |
19 |
catagagagcactgtcaccacattcttctcaagccaccttctaattggtctagcaccgtacacctacacaacaa |
92 |
Q |
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|||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
741812 |
catagacagcactgtcaccacctttttctcaagccaccttctaattggtctagcaccatacacctacacaacaa |
741885 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 42448946 - 42449157
Alignment:
| Q |
7 |
ccttataagcatcatagagagcactgtcaccacattcttctcaagccaccttctaattggtctagcaccgtacacctacacaacaataaaacaaa---gt |
103 |
Q |
| |
|
|||| |||||||| |||| | |||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||| |||||||||| ||| || |
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| T |
42448946 |
ccttgtaagcatcctagacaacactgtcaccacctttttctcaagccagcttctaattggtctagcaccatacacctacaaaacaataaaaaaaactagt |
42449045 |
T |
|
| Q |
104 |
ta---gtcgcattttttgttta--agaaaatgattaagatgatgattata-taagagcacttacaggatcatagctttcagcaagtatataatctagtgc |
197 |
Q |
| |
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|| || |||||||| | || |||||| |||||| ||||| || ||| ||| ||||||||||||||||||| ||||||||||||||||| | ||| |
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| T |
42449046 |
tataagtaacattttttttctataagaaaaagattaaaatgat-ataatagtaa---cacttacaggatcatagctctcagcaagtatataatccactgc |
42449141 |
T |
|
| Q |
198 |
tggatcagtaactgcc |
213 |
Q |
| |
|
| ||| ||||||||| |
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|
| T |
42449142 |
tccatctgtaactgcc |
42449157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 741966 - 742002
Alignment:
| Q |
155 |
cacttacaggatcatagctttcagcaagtatataatc |
191 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
741966 |
cacttacaggatcatagctctcagcaagtatataatc |
742002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 45468845 - 45468757
Alignment:
| Q |
1 |
ttcttcccttataagcatcatagagagcactgtcaccacattcttctcaagccaccttctaattggtctagcaccgtacacctacacaa |
89 |
Q |
| |
|
|||||| ||||| |||||| ||||||| |||||||||| |||||||| ||||| ||||| ||||||||||| || |||||||| |||| |
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|
| T |
45468845 |
ttcttctcttatgagcatcctagagagttctgtcaccaccttcttctctagccatcttctgattggtctagctccatacacctatacaa |
45468757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 45468663 - 45468600
Alignment:
| Q |
155 |
cacttacaggatcatagctttcagcaagtatataatctagtgctggatcagtaactgcctatgc |
218 |
Q |
| |
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||||||| ||||||||||| |||||||| ||||||||||| |||| ||| || |||||| |||| |
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| T |
45468663 |
cacttactggatcatagctctcagcaagaatataatctagagctgcatctgttactgccaatgc |
45468600 |
T |
|
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