View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17904_low_13 (Length: 218)

Name: NF17904_low_13
Description: NF17904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17904_low_13
NF17904_low_13
[»] chr5 (3 HSPs)
chr5 (5-170)||(19732038-19732203)
chr5 (35-109)||(16946302-16946376)
chr5 (62-104)||(15369480-15369522)
[»] chr4 (6 HSPs)
chr4 (12-109)||(42636392-42636489)
chr4 (34-104)||(23458688-23458758)
chr4 (35-104)||(56191433-56191502)
chr4 (35-104)||(56435061-56435130)
chr4 (52-102)||(20916814-20916863)
chr4 (52-102)||(31032755-31032804)
[»] chr6 (1 HSPs)
chr6 (34-109)||(29022862-29022937)
[»] scaffold0971 (1 HSPs)
scaffold0971 (34-104)||(1335-1405)
[»] chr8 (7 HSPs)
chr8 (34-104)||(26442008-26442078)
chr8 (62-104)||(9577692-9577734)
chr8 (62-104)||(13011056-13011098)
chr8 (62-104)||(13117842-13117884)
chr8 (62-104)||(13135578-13135620)
chr8 (62-104)||(18669008-18669050)
chr8 (62-104)||(13009816-13009858)
[»] chr2 (2 HSPs)
chr2 (34-104)||(2388812-2388882)
chr2 (52-102)||(35514112-35514161)
[»] chr7 (4 HSPs)
chr7 (35-104)||(48918555-48918624)
chr7 (32-104)||(28261751-28261823)
chr7 (62-104)||(41866289-41866331)
chr7 (62-102)||(31656855-31656895)
[»] chr1 (1 HSPs)
chr1 (35-104)||(45764995-45765064)
[»] scaffold0899 (1 HSPs)
scaffold0899 (57-102)||(2459-2504)
[»] chr3 (2 HSPs)
chr3 (52-102)||(26379287-26379336)
chr3 (52-102)||(29383688-29383737)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 19732038 - 19732203
Alignment:
Q  5 caataaaatgagaaaaaagaaaacattatatggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  19732038 caataaaattagaaaaaagaaaacattagatggcgtcgcccggacttgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacaa 19732137  T
Q  105 cacctatcttgtctgtttaatatgaactcaatttcactgactttgaagtttatgtccattcatcat 170  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  19732138 cacctatcttgtctgtttaatatgaactcaatttcactaactttgaagtttatgttcattcatcat 19732203  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 16946302 - 16946376
Alignment:
Q  35 tggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacgacacct 109  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16946302 tggcttcgcccggactcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacct 16946376  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 15369522 - 15369480
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15369522 ccttcagtgtgttagactgacgtgataaccaactacaccacga 15369480  T

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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 42636489 - 42636392
Alignment:
Q  12 atgagaaaaaagaaaacattatatggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacgacacct 109  Q
    |||| |||||| |||| | ||| |||| ||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42636489 atgaaaaaaaataaaaaaatatttggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacct 42636392  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 23458688 - 23458758
Alignment:
Q  34 atggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    ||||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23458688 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacga 23458758  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 56191433 - 56191502
Alignment:
Q  35 tggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  56191433 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacga 56191502  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 56435130 - 56435061
Alignment:
Q  35 tggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  56435130 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacga 56435061  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 20916814 - 20916863
Alignment:
Q  52 gaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccac 102  Q
    |||| |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  20916814 gaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 20916863  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 31032804 - 31032755
Alignment:
Q  52 gaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccac 102  Q
    |||| |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  31032804 gaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 31032755  T

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Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 29022937 - 29022862
Alignment:
Q  34 atggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacgacacct 109  Q
    ||||| ||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29022937 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacgaaacct 29022862  T

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Target: scaffold0971 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 1335 - 1405
Alignment:
Q  34 atggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    ||||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1335 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacga 1405  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 26442008 - 26442078
Alignment:
Q  34 atggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    ||||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26442008 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacga 26442078  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 9577734 - 9577692
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9577734 ccttcagtgtgttagactgacgtgataaccaactacaccacga 9577692  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 13011056 - 13011098
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13011056 ccttcagtgtgttagactgacgtgataaccaactacaccacga 13011098  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 13117884 - 13117842
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13117884 ccttcagtgtgttagactgacgtgataaccaactacaccacga 13117842  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 13135620 - 13135578
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13135620 ccttcagtgtgttagactgacgtgataaccaactacaccacga 13135578  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 18669008 - 18669050
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18669008 ccttcagtgtgttagactgacgtgataaccaactacaccacga 18669050  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 13009816 - 13009858
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  13009816 ccttcagtgtgttagactgacgtaataaccaactacaccacga 13009858  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 2388882 - 2388812
Alignment:
Q  34 atggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    ||||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2388882 atggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacga 2388812  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 35514161 - 35514112
Alignment:
Q  52 gaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccac 102  Q
    |||| |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  35514161 gaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 35514112  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 48918555 - 48918624
Alignment:
Q  35 tggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48918555 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacga 48918624  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 28261751 - 28261823
Alignment:
Q  32 atatggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    ||||||| |||||| | || |||| || | |||||||||||||||||||||||||||||||||||||||||||    
T  28261751 atatggcttcgcccaggctagaactggggaccttcagtgtgttagactgacgtgataaccaactacaccacga 28261823  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 41866289 - 41866331
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41866289 ccttcagtgtgttagactgacgtgataaccaactacaccacga 41866331  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 31656855 - 31656895
Alignment:
Q  62 ccttcagtgtgttagactgacgtgataaccaactacaccac 102  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  31656855 cctttagtgtgtgagactaacgtgataaccaactacaccac 31656895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 45764995 - 45765064
Alignment:
Q  35 tggcgtcgcccggacttgaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccacga 104  Q
    |||| ||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45764995 tggcttcgcccgggttcgaaccggagaccttcagtgtgttagactgacgtgataaccaactacaccacga 45765064  T

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Target: scaffold0899 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 2504 - 2459
Alignment:
Q  57 ggagtccttcagtgtgttagactgacgtgataaccaactacaccac 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  2504 ggagaccttcagtgtgttagactgacgtgataaccaactacaccac 2459  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 26379287 - 26379336
Alignment:
Q  52 gaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccac 102  Q
    |||| |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  26379287 gaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 26379336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 29383737 - 29383688
Alignment:
Q  52 gaaccggagtccttcagtgtgttagactgacgtgataaccaactacaccac 102  Q
    |||| |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  29383737 gaactggagaccttcagtgtgtaagactgacgtgataacc-actacaccac 29383688  T

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