View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17904_low_6 (Length: 424)
Name: NF17904_low_6
Description: NF17904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17904_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 38831841 - 38832228
Alignment:
| Q |
17 |
aggtttgtgtcgaggtgaagaagctcaatgacgagatcgtagtggccatttgctgctgctaaatcgattggtgatgcgtaccaccattgttgtcctgtgc |
116 |
Q |
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| T |
38831841 |
aggtttgtgtcgaggtgaagaagctcaatgacgagatcgtagtggccatttgctgctgctaaatcgattggtgatgcgtaccaccattgttgtcctgtgc |
38831940 |
T |
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| Q |
117 |
tttcccaacggagaggaaaatacgacggaggcattgttagagatgagaataatgtgataatgtcgtcaatggggatgaaaagaagttgaaaaagaaagta |
216 |
Q |
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| T |
38831941 |
tttcccaacggagaggaaaataagacggaggcattgttagagatgagaataatgtgataatgtcgtcaatggggatgaaaaaaagttgaaaaagaaagta |
38832040 |
T |
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| Q |
217 |
tagaaaggtgaagataaagattcttttgtcggtgagtgatctttttgtttttctaaccccacactaattactgattttggaaatcatatagtcaannnnn |
316 |
Q |
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| T |
38832041 |
tagaaaggtg------aagattcttttgtcggtgagtgatctttttgtttttctaaccccacactaattactgattttggaaatcatatagtcaa-attt |
38832133 |
T |
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| Q |
317 |
nngactcattatagaaacaaatatctcttgcattacaaacatgttttgtgatgattggtttgactcaatataaaacttaatacctggtagacaga |
411 |
Q |
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| T |
38832134 |
ttgactcattatagaaacaaatatctcttgcattacaaacatgttttgtgatgattggtttgactcaatataaaacttaatacctggtagacaga |
38832228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 34396930 - 34396857
Alignment:
| Q |
62 |
ccatttgctgctgctaaatcgattggtgatgcgtaccaccattgttgtcctgtgctttcccaacggagaggaaa |
135 |
Q |
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| T |
34396930 |
ccatttgcagctgctaaatcaataggtgttgcataccaccattggtctcctgtgctctcccaacgtagaggaaa |
34396857 |
T |
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