View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17904_low_7 (Length: 359)
Name: NF17904_low_7
Description: NF17904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17904_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 10047235 - 10047438
Alignment:
| Q |
1 |
attgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaattgtcggtgaaaatggatatgaggtcgttggcgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
10047235 |
attgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaattgtcggtgaaaatggatatgaggtcattggcgatg |
10047334 |
T |
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| Q |
101 |
atgaaatggaagagtaagctttatatagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttagcagttgttttggtccacaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10047335 |
atgaaatggaagagtaagctttatatagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttatcagttgttttggtccacaaaat |
10047434 |
T |
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| Q |
201 |
ggct |
204 |
Q |
| |
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|||| |
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| T |
10047435 |
ggct |
10047438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 38709198 - 38709321
Alignment:
| Q |
1 |
attgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaattgtcggtgaaaatggatatgaggtcgttggcgaag |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||| |||| || | |
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| T |
38709198 |
attgttaatgctgaaactggggtgaagtcagatattttgatacagataccaacttgaccaaaaactgtcggtgaaaatggatatgaggtcattggtgatg |
38709297 |
T |
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| Q |
101 |
atgaaatggaagagtaagctttat |
124 |
Q |
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|||||| |||||| |||||||||| |
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| T |
38709298 |
atgaaacggaagattaagctttat |
38709321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 10048504 - 10048571
Alignment:
| Q |
209 |
atgaattgttcatgaaccttaggtttttagcaagctaattctcatcattttggagggagtagttcatt |
276 |
Q |
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| T |
10048504 |
atgaattgttcatgaaccttaggtttttaacaagctaattctcatcattttggagggagtagttcatt |
10048571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 38709368 - 38709431
Alignment:
| Q |
126 |
tagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttagcagttgttttgg |
190 |
Q |
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|||| |||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||| |
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| T |
38709368 |
tagttcttgaatgcatcgaaattgcaaacatat-tcacaagtatctcttttattagttcttttgg |
38709431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 45468927 - 45468990
Alignment:
| Q |
1 |
attgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaa |
64 |
Q |
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| T |
45468927 |
attgttaatgctgaaactggggtgaagtctgatatattgattcagataccgaatggacctaaaa |
45468990 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 739580 - 739517
Alignment:
| Q |
1 |
attgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaa |
64 |
Q |
| |
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||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
739580 |
attgttaatgctgaaatcggggtgaagtcggatattttgattcagataacaaatggaccaaaaa |
739517 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 5959839 - 5959771
Alignment:
| Q |
124 |
tatagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttagcagttgttttggtcc |
193 |
Q |
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| T |
5959839 |
tatagtcctagaatgtatcgaaattgcaaatacatc-cacaaatgtctcttttatcagttattttggtcc |
5959771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 14242638 - 14242670
Alignment:
| Q |
124 |
tatagtccttgaatgtatcgaaattgcaaacat |
156 |
Q |
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| T |
14242638 |
tatagtccttaaatgtatcgaaattgcaaacat |
14242670 |
T |
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