View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17905_high_2 (Length: 511)
Name: NF17905_high_2
Description: NF17905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17905_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 11 - 496
Target Start/End: Complemental strand, 30297523 - 30297038
Alignment:
| Q |
11 |
tagattatactaccatatatttatttctttgctaagcacaagttttcatggtgctggttcatttattaattcaataaccattttgcggttggacaaatac |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297523 |
tagattgtactaccatatatttatttctttgctaagcacaagttttcatggtgctggttcatttattaattcaataaccattttgcggttggacaaatat |
30297424 |
T |
|
| Q |
111 |
aaattcttacaacaactcccctaggacccaggaaaggtgggaaagagagagatggaaacgtaaaagaactatgctttctttcttctcaaaaagcatctag |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297423 |
aaattcttacaacaactcccctaggacccaagaaaggtgggaaagagagagatggaaacgtaaaagaactatgctttctttcttctcaaaaagcatctaa |
30297324 |
T |
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| Q |
211 |
aatgacaataattatgtattaaaacacaagccaaaacaagaaattttaggccatgcttgttttgcatgtaggtagtagatgagagggtaggtaatttgga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297323 |
aatgacaataattatgtattaaaacacaagccaaaacaagaaattttaggccatgcttgttttgcatgtaggtagtagatgagagggtaggtaatttgga |
30297224 |
T |
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| Q |
311 |
atgaatatcacttcacaattggttatcataacaaaaatgtagggaggttgaaacttaaagtagcctgcaacacatttacacctcacaaattttggtcact |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297223 |
atgaatatcacttcacaattggttatcataacaaaaatgtagggaggttgaaacttaaagtagcctgcaacacatttacacctcacaaattttggtcact |
30297124 |
T |
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| Q |
411 |
cccatagcatgaaagtgattttccaccctctagctagaaaccatgggtgaaaatcaataccttacttctaccacactccgtcttct |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297123 |
cccatagcatgaaagtgattttccaccctctagctagaaaccatgggtgaaaatcaataccttacttctaccacactccgtcttct |
30297038 |
T |
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