View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17905_high_3 (Length: 438)
Name: NF17905_high_3
Description: NF17905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17905_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 9454454 - 9454874
Alignment:
| Q |
1 |
agtgaaatgatgactgttgttggaggaagatccagatgttggcattttgacttcgtcaagttcgttttaaaatataactcgaaatataggtcgttggatc |
100 |
Q |
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| T |
9454454 |
agtgaaatgatgacagttgttggaggaagatccagatgttggcattttgacttcgtcaagttcgtttaaaaatataactcgaaatataggtcgttggatc |
9454553 |
T |
|
| Q |
101 |
ttcatcgaatgactaagatgcgtaattgtgtttatgcaaaattgcctccaatattgattataaattgaggctagaatttgtattttttgtctctacaatt |
200 |
Q |
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| T |
9454554 |
ttcatctaatgactaagatgcgtaattgtgtttatgcaaaattgcctccaatattgattataaattgagactagaatttgtattttttgtctctacaatt |
9454653 |
T |
|
| Q |
201 |
gatatttagcgtgcatttgtattcacattttcctcactgccaccatgcattcaagagcattgcacccgtaaaaatacataagctaaaaactgtagattca |
300 |
Q |
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| T |
9454654 |
gatatttagcgtccgtttgtattcgcattttcctcattgccaccatgcatgcgagagcattgcacccgtaaaaatacataagctaaaaactgtaggttca |
9454753 |
T |
|
| Q |
301 |
aaataaacgcaagttcactttttgggcgccaaaacaaacgaccacttagtcttaaatttattgtcgaactcatttttagcatttatttggtaactcccgc |
400 |
Q |
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| T |
9454754 |
aagtaaacgcacgttcactttttgggcgccaaaacaaacgaccacttagtcttaaatttattgtcgaactcatttttagcatatatttggtaactaccgc |
9454853 |
T |
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| Q |
401 |
tactaattctcgcaaccgtga |
421 |
Q |
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| T |
9454854 |
tactaattctcgcaaccgtga |
9454874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 208
Target Start/End: Original strand, 9443229 - 9443393
Alignment:
| Q |
40 |
tggcattttgacttcgtcaagttcgttttaaaatataactcgaaatataggtcgttggatcttcatcgaatgactaagatgcgtaattgtgtttatgcaa |
139 |
Q |
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|||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || || |||||| || |
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| T |
9443229 |
tggcattttggcttcatcgagtttgttttaaaatataactcgaaatataggtcgttggatcttcatctaacgactaagatatgtgat----tttatggaa |
9443324 |
T |
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| Q |
140 |
aattgcctccaatattgattataaattgaggctagaatttgtattttttgtctctacaattgatattta |
208 |
Q |
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| T |
9443325 |
aattgcttccaaagttgattctaactcgaaactagaacttatagtttttgtctctaccattgattttta |
9443393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 6744833 - 6744890
Alignment:
| Q |
153 |
attgattataaattgaggctagaatttgtattttttgtctctacaattgatatttagc |
210 |
Q |
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|||||||||| |||| ||||||||||| | |||||||||||||||||||| |||||| |
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| T |
6744833 |
attgattatagcttgaagctagaatttgaagtttttgtctctacaattgatttttagc |
6744890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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