View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17905_high_6 (Length: 269)

Name: NF17905_high_6
Description: NF17905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17905_high_6
NF17905_high_6
[»] chr3 (12 HSPs)
chr3 (21-257)||(2790048-2790284)
chr3 (21-257)||(2797051-2797278)
chr3 (32-257)||(5412597-5412813)
chr3 (30-257)||(2748688-2748906)
chr3 (30-253)||(2806955-2807178)
chr3 (30-257)||(2856040-2856258)
chr3 (30-257)||(2768759-2768977)
chr3 (32-257)||(2838835-2839048)
chr3 (32-257)||(2758904-2759120)
chr3 (33-82)||(2818413-2818462)
chr3 (209-257)||(2755734-2755782)
chr3 (211-257)||(2818247-2818293)
[»] scaffold0691 (1 HSPs)
scaffold0691 (34-253)||(6386-6596)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 2790284 - 2790048
Alignment:
Q  21 cctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  2790284 cctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgat 2790185  T
Q  121 ggggaatcaaagttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattc 220  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2790184 ggggaatcaaagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattc 2790085  T
Q  221 atcgatgatatcttcaatgcgaaatgatgcttctctc 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  2790084 atcgatgatatcttcaatgcgaaatgatgcttctctc 2790048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 2797278 - 2797051
Alignment:
Q  21 cctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||     
T  2797278 cctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaa 2797179  T
Q  121 ggggaatcaaagttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattc 220  Q
    ||| |||||| ||||||||||| |||||||||||||||| || ||||   | |||||| | ||||| |      ||||||||||| ||| ||||||||||    
T  2797178 gggaaatcaatgttttgattagacttgcaatcttgcagactaaagat---ccgcatcccggaggatag------gccctatgcatcagctgaaggtattc 2797088  T
Q  221 atcgatgatatcttcaatgcgaaatgatgcttctctc 257  Q
    ||| |||| ||||||||||||||||||||||||||||    
T  2797087 atcaatgacatcttcaatgcgaaatgatgcttctctc 2797051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 32 - 257
Target Start/End: Complemental strand, 5412813 - 5412597
Alignment:
Q  32 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgatggggaatcaaa 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| || ||||||||| ||||||||||||||||||||||||    
T  5412813 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaa 5412714  T
Q  132 gttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatat 231  Q
    |||||||| | ||||||||||||||||| || ||||   |||||||||  |||||||       |||||||||| |||||| ||||||| || |||| ||    
T  5412713 gttttgatcaagcttgcaatcttgcagactaaagat---ctgcatccaagaggattg------accctatgcattagccgatggtattcgtcaatgacat 5412623  T
Q  232 cttcaatgcgaaatgatgcttctctc 257  Q
    ||||||||||||||||||||||||||    
T  5412622 cttcaatgcgaaatgatgcttctctc 5412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 2748906 - 2748688
Alignment:
Q  30 tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgatggggaatca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| || ||| ||||| ||||| |||||| |||||||||    
T  2748906 tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatca 2748807  T
Q  130 aagttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgat 229  Q
    ||||||||||| | ||||||||||||| || || ||||   | ||||| || |||||||      ||||||||||| ||||||||||||||||| ||||     
T  2748806 aagttttgatttgccttgcaatcttgccgactaaagat---ccgcatctaggaggattg------gccctatgcattagccgaaggtattcatcaatgac 2748716  T
Q  230 atcttcaatgcgaaatgatgcttctctc 257  Q
    ||||||||||||||||||||||||||||    
T  2748715 atcttcaatgcgaaatgatgcttctctc 2748688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 2807178 - 2806955
Alignment:
Q  30 tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgatggggaatca 129  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||  ||   ||||||||     |||| ||| ||||| |||||| |||||||||    
T  2807178 tgtgaaatttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgacggggaatca 2807079  T
Q  130 aagttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgat 229  Q
    |||||||||  ||||||||||||||| |||||  ||||  || |||||||| |||| ||||||||||| ||||||| |||||| ||||||||||||||||    
T  2807078 aagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgat 2806979  T
Q  230 atcttcaatgcgaaatgatgcttc 253  Q
    ||||||||||||||||||||||||    
T  2806978 atcttcaatgcgaaatgatgcttc 2806955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 2856040 - 2856258
Alignment:
Q  30 tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgatggggaatca 129  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||   ||| |||| || |||||| || || || | ||||||||||||||    
T  2856040 tgtgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaatca 2856139  T
Q  130 aagttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgat 229  Q
    ||||||||||| |||||| || ||||  || || ||||   |  | ||||  |||||||      |||||||| || | ||||||||||||||| ||||     
T  2856140 aagttttgattcggcttgtaaccttgttgactaaagat---ccacgtccatgaggattg------gccctatgtatcaaccgaaggtattcatcaatgac 2856230  T
Q  230 atcttcaatgcgaaatgatgcttctctc 257  Q
    ||||||||||||||||||||||||||||    
T  2856231 atcttcaatgcgaaatgatgcttctctc 2856258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 2768977 - 2768759
Alignment:
Q  30 tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgatggggaatca 129  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||||||||   |||||||| || ||||||  | || || | |||| ||||| |||    
T  2768977 tgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatctctaatgcaattttatgacggggagtca 2768878  T
Q  130 aagttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgat 229  Q
    |||||||||||||||||||||||||| ||| || ||||   | || ||  | | |||||      ||||||||  | | ||||||||||||||| ||||     
T  2768877 aagttttgattaggcttgcaatcttgaagattaaagat---ccgcgtctgggacgattg------gccctatgggtcaaccgaaggtattcatcaatgac 2768787  T
Q  230 atcttcaatgcgaaatgatgcttctctc 257  Q
    ||||||||||||||||||||||||||||    
T  2768786 atcttcaatgcgaaatgatgcttctctc 2768759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 257
Target Start/End: Original strand, 2838835 - 2839048
Alignment:
Q  32 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgatggggaatcaaa 131  Q
    |||||||||||||||||||||||| ||||||| |||||||||  || |||    ||| ||||  | |||||| || || || |  ||| |||||||||||    
T  2838835 tgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaa 2838934  T
Q  132 gttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatat 231  Q
    ||||||||||  |||| | || |||| ||   ||||   |||||||||| ||||||||      |||||||||| || |||||||||||||| |||| ||    
T  2838935 gttttgattaaccttggagtcatgcataa---agat---ctgcatccaggaggattgg------ccctatgcattagtcgaaggtattcatcaatgacat 2839022  T
Q  232 cttcaatgcgaaatgatgcttctctc 257  Q
    ||||||||||||||||||||||||||    
T  2839023 cttcaatgcgaaatgatgcttctctc 2839048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 257
Target Start/End: Complemental strand, 2759120 - 2758904
Alignment:
Q  32 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgatggggaatcaaa 131  Q
    |||||||||||||||||||||| | |||||||||||||||||  ||||||    ||| ||||  | |||||| || || || |  ||| |||||||||||    
T  2759120 tgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaa 2759021  T
Q  132 gttttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatat 231  Q
    ||||||||| |||||| |||||||  ||||| ||||   | ||  |||| ||||||||      || |||| || |||||||||||||| || || ||||    
T  2759020 gttttgattgggcttgtaatcttgttgaatacagat---ccgctaccaggaggattgg------ccgtatggatcagccgaaggtattcgtcaattatat 2758930  T
Q  232 cttcaatgcgaaatgatgcttctctc 257  Q
    ||||||||||||| ||||||||||||    
T  2758929 cttcaatgcgaaacgatgcttctctc 2758904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 2818462 - 2818413
Alignment:
Q  33 gaaatttgaaagttatacctctcacttctttccttgattccacgaattga 82  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  2818462 gaaatttggaagttatacctctcgcttctttccttgattccacgaattga 2818413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 2755782 - 2755734
Alignment:
Q  209 ccgaaggtattcatcgatgatatcttcaatgcgaaatgatgcttctctc 257  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2755782 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc 2755734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 2818293 - 2818247
Alignment:
Q  211 gaaggtattcatcgatgatatcttcaatgcgaaatgatgcttctctc 257  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  2818293 gaaggtattcatcaatgacatcttcaatgcgaaatgatgcatctctc 2818247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 6386 - 6596
Alignment:
Q  34 aaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaagctatctgatgatggggaatcaaagt 133  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||   ||| |||| || ||||||||| ||||||||||| || | |||||||||    
T  6386 aaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgagaaatcaaagt 6485  T
Q  134 tttgattaggcttgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatatct 233  Q
    ||||||||||||| |||||||||||| ||  |||   | |||||||| ||| |||      |||||||| || ||||||||||||||||| || | ||||    
T  6486 tttgattaggcttacaatcttgcagactaatgat---ccgcatccaggagggttg------gccctatggatcagccgaaggtattcatcaataacatct 6576  T
Q  234 tcaatgcgaaatgatgcttc 253  Q
    ||||||||||||||||||||    
T  6577 tcaatgcgaaatgatgcttc 6596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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