View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17905_low_10 (Length: 239)
Name: NF17905_low_10
Description: NF17905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17905_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 32850135 - 32850345
Alignment:
| Q |
16 |
atgtattgctgccaaaggaactaggctttttgtgaaaaagcataaagcagttgtggcatgtatgtatacatattttttgtgaactaaagcaacttggctt |
115 |
Q |
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| T |
32850135 |
atgtattgctgccaaaggaactaggctttttgtgaaaaagcacaaagcagttgtagcatgtatgtatacatattttttgtgaactaaagcaacttggctt |
32850234 |
T |
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| Q |
116 |
caaagaaattatctataactaagtggaatccgcaataaaggcactggatatggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32850235 |
caaagaaattatctataactaagtggaatccgcaataaaggcactggatatggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagc |
32850334 |
T |
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| Q |
216 |
tcacatcaatt |
226 |
Q |
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||||||||||| |
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| T |
32850335 |
tcacatcaatt |
32850345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 32855703 - 32855762
Alignment:
| Q |
166 |
tggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32855703 |
tggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaat |
32855762 |
T |
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