View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17905_low_2 (Length: 716)
Name: NF17905_low_2
Description: NF17905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17905_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 101 - 708
Target Start/End: Complemental strand, 4475016 - 4474415
Alignment:
| Q |
101 |
gtgtattatccaccgttaagaccccttgcatgatttaattgactcacatttatgtagaatacgagttgcatcttgctttatcaaatatttattgccacta |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4475016 |
gtgttttatccaccgttaagaccccttgcatgatttaattgactcacatttatgtagaatacgagttgcatcttgctttatcaaatatttattgccacta |
4474917 |
T |
|
| Q |
201 |
aaaattaatatattatattgagttgtatatttctttctcaaagttggcaccacatattattttattacattgaattataaattttctttctcaaaattgt |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4474916 |
aaaatta-tatattatattgagttgtatatttctttctcaaagttggcaccacatattattttattacattgaattataaattttctttctcaaaattgt |
4474818 |
T |
|
| Q |
301 |
tcaccaacattaccatacccttctttcgtcctttaaaaacccctacaccnnnnnnnnnnnnnnnatcataacatctttgagccaactataatctctatag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4474817 |
tcaccaacattaccatacccttctttcgtcctttaaaaacccctacaccctctctctctctctcatcataacatctttgagccaactataatctctatag |
4474718 |
T |
|
| Q |
401 |
ctagctcaaccaaattccatattcccctcacaaaacatcttagcaaattaaactcatatttttcttccttcnnnnnnntttcctccctttgtcatgggag |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4474717 |
ctagctcaaccaaattccatattcccctcacaaaacatcttagcaaa-----ctcatatttttcttccttcaaaaaaatttcctccctttgtcatgggag |
4474623 |
T |
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| Q |
501 |
cctttccacttttcccaccaatttccaaatgtagcacaaaagatagatcaaaccaaacagtggcatccgacttagacggcacccttctcgtgtcgcgaag |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
4474622 |
cctttccacttttcccaccaatttccaaatgtagcacaaaagatagatcaaaccaaaccgtggcatccgacttagacggcacccttctcatgtcgcgaag |
4474523 |
T |
|
| Q |
601 |
tgcatttccatactacatgctcgtcgcactcgaagctggaagcattctaagagctttaattctcttatccttagtccctttcgtatattttacataccta |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4474522 |
tgcatttccatactacatgctcgtcgcactcgaagctggaagcattctaagagctttaattctcttatccttagtccctttcgtatatttcacgtaccta |
4474423 |
T |
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| Q |
701 |
ttcatctc |
708 |
Q |
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||| |||| |
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| T |
4474422 |
ttcgtctc |
4474415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4475157 - 4475124
Alignment:
| Q |
1 |
aaaactaaatttagtgacatgaattaagggaaag |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4475157 |
aaaactaaatttagtgacatgaattaagggaaag |
4475124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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