View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17905_low_3 (Length: 665)

Name: NF17905_low_3
Description: NF17905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17905_low_3
NF17905_low_3
[»] chr8 (1 HSPs)
chr8 (16-657)||(21599764-21600416)


Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 16 - 657
Target Start/End: Complemental strand, 21600416 - 21599764
Alignment:
Q  16 caaaagtgaccatttcccccattttatttcggtcttactcatc----------gcaaactcatcatagatagttatcattttacatacaatgagtacaat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  21600416 caaaagtgaccatttcccccattttatttcggtcttactcatcttaaaaatgtgcaaactcatcatagatagctatcattttacttacaatgagtacaat 21600317  T
Q  106 agtatatactctatcaacgatgacgctat-ttagggtgtaaacttcagtaatatgtgaaaggcttttgtgtgctcacgatgcttgtatttcaaatgtttc 204  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21600316 agtatatactctatcaacaatgacgctatgttagggtgtaaacttcagtaatatgtgaaaggcttttgtgtgctcacgatgcttgtatttcaaatgtttc 21600217  T
Q  205 taaacccttctaagacgtaaaaatcctagaatatcttctgaatattggtcaccagactcctcttttcaagggagcgggttggtgatccttatccaaatcc 304  Q
    ||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21600216 taaacccttctaagacgtaaaaaccccataatatcttctgaatattggtcaccagactcctcttttcaagggagcgggttggtgatccttatccaaatcc 21600117  T
Q  305 caactcaattgtccatgacagaccttggaggtggtaccagaggattatcaccaatctttggtacttcaatcaaaatttgattcggattggtttgtgcttc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21600116 caactcaattgtccatgacagaccttggaggtggtaccagaggattatcaccaatctctggtacttcaatcaaaatttgattcggattggtttgtgcttc 21600017  T
Q  405 tttaagtgtatcttcttctaactgagccaaacaaattgccttctggttagctcttactgtccttttgatctcaagatcatgaagtaattcatccctcggg 504  Q
     |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21600016 cttaagtgtatcttcttctaattgagccaaacaaattgccttctagttagctcttactgtccttttgatctcaagatcatgaagtaattcatccctcggg 21599917  T
Q  505 attttacctcgcataaacaaccaaaaaacatcttagtaacgctacacaataaaagattaaaataagagctggaatgtgtgtgtatatatcaaatttttca 604  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21599916 attttacctcgcataaacaaccaaaagacatcttagtaacgctacacaataaaagattaaaataagagctggaatgtgtgtgtgtatatcaaatttttca 21599817  T
Q  605 atctattagacnnnnnnntgtaaacataccgaagcaataaaataattcatatc 657  Q
    |||||||||||       |||||||||||||||| ||||||||||||||||||    
T  21599816 atctattagacaaaaaaatgtaaacataccgaagtaataaaataattcatatc 21599764  T

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