View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17905_low_6 (Length: 400)

Name: NF17905_low_6
Description: NF17905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17905_low_6
NF17905_low_6
[»] chr1 (6 HSPs)
chr1 (20-384)||(16138886-16139252)
chr1 (253-384)||(16128067-16128198)
chr1 (22-156)||(16127378-16127512)
chr1 (279-385)||(33732790-33732896)
chr1 (20-108)||(33732182-33732270)
chr1 (42-102)||(51044474-51044534)
[»] chr4 (1 HSPs)
chr4 (42-106)||(43560540-43560604)
[»] chr3 (3 HSPs)
chr3 (42-106)||(34626692-34626756)
chr3 (41-107)||(44674037-44674103)
chr3 (41-105)||(33695348-33695412)
[»] chr5 (3 HSPs)
chr5 (20-105)||(1281333-1281418)
chr5 (41-105)||(1319321-1319385)
chr5 (42-102)||(2590849-2590909)
[»] chr8 (1 HSPs)
chr8 (55-105)||(5960394-5960444)
[»] chr2 (1 HSPs)
chr2 (63-105)||(40819949-40819991)
[»] chr7 (2 HSPs)
chr7 (65-105)||(44678316-44678356)
chr7 (41-105)||(48892612-48892676)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 16138886 - 16139252
Alignment:
Q  20 tcctcttcttcatttgtaaaatttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatcttaataaacctacaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16138886 tcctcttcttcatttgtaaaatttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatcttaataaacctgcaa 16138985  T
Q  120 tatttacaagagaaacaaaaactaaatcaacacacaa--gatttaaaacattctaaattatcccaaaagtataatattatatctaaatcatcaagttcat 217  Q
      |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  16138986 agtttacaagagaaacaaaaactaaatcaacacacaaaagatttaaaacattccaaattttcccaaaagtataatattatatctaaatcatcaagttcat 16139085  T
Q  218 tcctataagggnnnnnnnaacctaacaaaaatatcaatatttatcaagaaagataaacaaatacctgcatgttttggtagggcacgccaattgctatgtc 317  Q
    | |||||||||       ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  16139086 tgctataagggtttttttaacctaacaaaaatatcaatatttatcaagaaaaatgaacaaatacctgcatgttttggtagggcacgccaattgctatgtc 16139185  T
Q  318 catgtttattgatgtatgatgtgaggatttcatcttcctctaaggtccaaggaccctttttcaatcc 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  16139186 catgtttattgatgtatgatgtgaggatttcatcttcctctaaggtccaaggacctttcttcaatcc 16139252  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 16128067 - 16128198
Alignment:
Q  253 aatatttatcaagaaagataaacaaatacctgcatgttttggtagggcacgccaattgctatgtccatgtttattgatgtatgatgtgaggatttcatct 352  Q
    ||||||||||||||||||  |||||||||| |||| |||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  16128067 aatatttatcaagaaagacgaacaaataccggcatcttttgggagagcacgccaattgctatgtccatgtttgttgatgtaggatgtgaggatttcatct 16128166  T
Q  353 tcctctaaggtccaaggaccctttttcaatcc 384  Q
    |||||||||||||||||||| || ||||||||    
T  16128167 tcctctaaggtccaaggacctttcttcaatcc 16128198  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 16127378 - 16127512
Alignment:
Q  22 ctcttcttcatttgtaaaatttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatcttaataaacctacaata 121  Q
    |||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  |    
T  16127378 ctcttcttcatttgaaaaatttcctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccacatcttaataaacctgcataa 16127477  T
Q  122 tttacaagagaaacaaaaactaaatcaacacacaa 156  Q
    || ||||||||| | ||||||||||||| ||||||    
T  16127478 ttgacaagagaagccaaaactaaatcaatacacaa 16127512  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 385
Target Start/End: Original strand, 33732790 - 33732896
Alignment:
Q  279 tacctgcatgttttggtagggcacgccaattgctatgtccatgtttattgatgtatgatgtgaggatttcatcttcctctaaggtccaaggacccttttt 378  Q
    |||||||| | ||||| |||||||||||||||| ||| |||||||| | |||||| ||||| ||||||||||||||||| |  | |||||||||| | ||    
T  33732790 tacctgcaagctttgggagggcacgccaattgccatggccatgtttttggatgtaagatgtaaggatttcatcttcctcaagagaccaaggacccctctt 33732889  T
Q  379 caatccc 385  Q
    |||||||    
T  33732890 caatccc 33732896  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 33732182 - 33732270
Alignment:
Q  20 tcctcttcttcatttgtaaaatttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatcttaa 108  Q
    ||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||| || | ||| || || |||||||| |||||    
T  33732182 tcctcttcttcatttgtgaaatttcctctcttaatatctggtctcaaatagttaatccacctaagtctgcagctttttccacaccttaa 33732270  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 51044534 - 51044474
Alignment:
Q  42 ttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccaca 102  Q
    |||||||||| | ||||||  | |||||||| ||||||||||||||||| |||||||||||    
T  51044534 ttcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccaca 51044474  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 43560540 - 43560604
Alignment:
Q  42 ttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatctt 106  Q
    |||||||||| | ||||||  | |||||||| |||||||||||||||||||||||||||||||||    
T  43560540 ttcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 43560604  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 34626692 - 34626756
Alignment:
Q  42 ttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatctt 106  Q
    |||||||||| | ||||||| | | |||||| |||||||||||||||||||||||||||||||||    
T  34626692 ttcctctcttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatctt 34626756  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 44674103 - 44674037
Alignment:
Q  41 tttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatctta 107  Q
    ||||||||||| | ||||||| |||  || || |||||||||||||| |||||||| ||||||||||    
T  44674103 tttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatctta 44674037  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 33695412 - 33695348
Alignment:
Q  41 tttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatct 105  Q
    ||||||||||||||||||||  ||||||| ||  |||| || |  ||||||||||||||||||||    
T  33695412 tttcctctcttaatatcaggccttaaataattggtccaccttagcctacaactctttccacatct 33695348  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 1281418 - 1281333
Alignment:
Q  20 tcctcttcttcatttgtaaaatttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatct 105  Q
    |||||||||||||  | ||| || ||||| |||||||||||  ||||||| ||  ||||||| || ||||||||||||||||||||    
T  1281418 tcctcttcttcatcagaaaatttccctcttttaatatcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 1319321 - 1319385
Alignment:
Q  41 tttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatct 105  Q
    ||||||||  ||||||||||  ||| ||| ||| ||||||| | |||||||||||||||||||||    
T  1319321 tttcctcttctaatatcaggccttagataattattccatctaagtctacaactctttccacatct 1319385  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 2590909 - 2590849
Alignment:
Q  42 ttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccaca 102  Q
    |||||||  ||||||||||  ||||||| || ||||||||||| ||||||||||| |||||    
T  2590909 ttcctcttctaatatcaggccttaaataatttatccatctcaacctacaactcttaccaca 2590849  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 5960394 - 5960444
Alignment:
Q  55 atcaggttttaaatagttaatccatctcaatctacaactctttccacatct 105  Q
    ||||||| ||| ||| || |||||||| |||||||||||||||||||||||    
T  5960394 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 5960444  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 40819949 - 40819991
Alignment:
Q  63 ttaaatagttaatccatctcaatctacaactctttccacatct 105  Q
    |||||||||||| ||||||||||| |||||| |||||||||||    
T  40819949 ttaaatagttaagccatctcaatcgacaactttttccacatct 40819991  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 44678316 - 44678356
Alignment:
Q  65 aaatagttaatccatctcaatctacaactctttccacatct 105  Q
    ||||||||||||||||| ||||||||||| || ||||||||    
T  44678316 aaatagttaatccatcttaatctacaacttttaccacatct 44678356  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 48892612 - 48892676
Alignment:
Q  41 tttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatct 105  Q
    ||||||||||| ||||| ||| ||| |||||| |||||||| | ||| ||||| |||||||||||    
T  48892612 tttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 48892676  T

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