View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17905_low_9 (Length: 255)
Name: NF17905_low_9
Description: NF17905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17905_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 51739836 - 51739610
Alignment:
| Q |
14 |
attatacttcttatcatccatcttcgtattaaccatcatattaaacaccaataagcaacccatttctacaatcaatgcggcagacacagcgattcgaccg |
113 |
Q |
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| T |
51739836 |
attatacttcttatcatccatcttcgtattaaccatcatattaaacaccaataagcaacccatttctacaatcaatgcggcggacacagcgattcgaccg |
51739737 |
T |
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| Q |
114 |
acatcagatgcggcaaaccttaaatctgctgccaaacggatgaccataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaacc |
213 |
Q |
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| T |
51739736 |
acatcagatgcggcaaaccttaaatctgctgccaaacggatgaccataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaacc |
51739637 |
T |
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| Q |
214 |
ttgaaccatcgatgcctaattcttgat |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
51739636 |
ttgaaccatcgatgcctaattcttgat |
51739610 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 10200481 - 10200362
Alignment:
| Q |
62 |
caataagcaacccatttctacaatcaatgcggcagacacagcgattcgaccgacatcagatgcggcaaaccttaaatctgctgccaaacggatgaccata |
161 |
Q |
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| T |
10200481 |
caataagcaagccatttctgtaatcaacgctgaagacaccgcgattcgcccgatatcggatgcagcaaatcgtaactccgccgtcaaacgaatcaccatg |
10200382 |
T |
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| Q |
162 |
ggggaacttgtgtatgatac |
181 |
Q |
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| T |
10200381 |
ggggagcttgtgtatgatac |
10200362 |
T |
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