View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_high_10 (Length: 383)
Name: NF17906_high_10
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 364
Target Start/End: Original strand, 52170665 - 52171013
Alignment:
| Q |
11 |
taattctcaaggatcttcaacactagaacgaatagttttcataatgtaaactaggttttaggttttagcacgnnnnnnnnctaatagagattttgataat |
110 |
Q |
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| T |
52170665 |
taattctcaaggatcttcaacactagaacgaatagttttcatgatgtaaactaggttttag-------caccaaaaaaaactaatagagattttgataat |
52170757 |
T |
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| Q |
111 |
gcaacaaaaatgatagaattctcagaaatttgaaaagcaagacatgtagtttattgattgta--aatttgaagcaaattgagagaattgaattaccttgg |
208 |
Q |
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| T |
52170758 |
gcaacaaaaatgatagaattctcagaaatttgaaaagcaagacatgtagtttattgattgtataaatttgaagcaaattgagagaattgaattaccttgg |
52170857 |
T |
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| Q |
209 |
gatcgaaacgcatttgccagacttcagaaggaggagcttcaagagtagcgatagtggcattagaatcaacatcaaagacacgaacaaagctatcaagaga |
308 |
Q |
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| T |
52170858 |
gatcgaaacgcatttgccagacttcagaaggaggagcttcaagagtagcgatagtggcattagaatcaacatcaaagacacgaacaaagctatcaagaga |
52170957 |
T |
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| Q |
309 |
agaagaagcggcaattgagccgagagggtgagcagcgacggaagcgacgccgagac |
364 |
Q |
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| T |
52170958 |
agaagaagcggcaattgagccgagagggtgagcagcgacggaagcgacgccgagac |
52171013 |
T |
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