View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_high_12 (Length: 360)
Name: NF17906_high_12
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 41648579 - 41648327
Alignment:
| Q |
18 |
atgtcaaatcaaaatgtcctaatcgcaaccccattaccagcatgtgaatatttccatttctccacgtttgttttgtcatatcaaatacacttaaataaat |
117 |
Q |
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| T |
41648579 |
atgtcaaatcaaaatgtcctaatcgcaaccccattaccagcatgtgaatatttccatttctccacgttttttttgtcatatcaaatacacttaaaaaaat |
41648480 |
T |
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| Q |
118 |
tggtcggttgttttttactctattgtgttaggaaattatttatattgagcaatttgtttttatcaaaaaataacttattccctactttaatttgtattgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41648479 |
tggtcggttgttttttactctattgtgttaggaaattatttatattgagcaatttgtttttatcaaaaaataacttattccctactttaatttgtattgg |
41648380 |
T |
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| Q |
218 |
tttttatcgaaaaataagttattccctactttaatttggatcggttagaaagc |
270 |
Q |
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| T |
41648379 |
tttttatcgaaaaataagttattccctactttaatttggattggttagaaagc |
41648327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 43230085 - 43230166
Alignment:
| Q |
189 |
aacttattccctactttaatttgtattggtttttatcgaaaaataagttattccctactttaatttggatcggttagaaagc |
270 |
Q |
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| T |
43230085 |
aacttattccctactttaatttgaattggtttttatcgaaaaataagttattccctactttaatttggattggttagaaagc |
43230166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 43229981 - 43230069
Alignment:
| Q |
116 |
attggtcggttgttttttactctattgtgttaggaaattatttatattgagcaatttg-tttttatcaaaaaataacttattccctacttt |
205 |
Q |
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| T |
43229981 |
attggtcggttgtttttcact--attgtgttaggaaataatttaaattgagcaatttggtttttatcaaaaaataacttattccctacttt |
43230069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 43229854 - 43229967
Alignment:
| Q |
18 |
atgtcaaatcaaaatgtcctaatcgcaaccccattaccagcatgtgaatatttccatttctccacgtttgttttgtcatatcaaatacacttaaataa-a |
116 |
Q |
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||||||||||||||||||| | ||||||||| ||||||||||||||| ||||||| |||||||||||||| || |||||| |||||||||||| || | |
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| T |
43229854 |
atgtcaaatcaaaatgtccgagtcgcaaccc-attaccagcatgtgagtatttccttttctccacgtttgacttatcatatagaatacacttaaaaaata |
43229952 |
T |
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| Q |
117 |
ttggtcggttgtttt |
131 |
Q |
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|||||||||| |||| |
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| T |
43229953 |
ttggtcggttttttt |
43229967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 43230108 - 43230159
Alignment:
| Q |
168 |
aatttgtttttatcaaaaaataacttattccctactttaatttgtattggtt |
219 |
Q |
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|||| ||||||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
43230108 |
aattggtttttatcgaaaaataagttattccctactttaatttggattggtt |
43230159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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