View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_1 (Length: 576)
Name: NF17906_low_1
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_1 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 71 - 576
Target Start/End: Complemental strand, 5985049 - 5984552
Alignment:
| Q |
71 |
aaagcctccttcactatccatctacactctaaactatcactactaccaaaatactaatagtaaccatcataaaggtaacattatatctaacatgtgatag |
170 |
Q |
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| T |
5985049 |
aaagccttcttcactatccaactacactctaaactatcactactaccaaaatactaacagtaactatcaaaaaggtaacattatatc-aacatgtgatag |
5984951 |
T |
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| Q |
171 |
aaaaatcactatgccctttaaactaacacaagatattaacttcaaagaaaataaattaagttataataataatactccttgttttgtcttcaacaaaaat |
270 |
Q |
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| T |
5984950 |
ataaatcactatgccttttgaactaacacaagatattaacttcaaagaaaataaattaagttataataataatactccttgttttgtcatcaacaaaaat |
5984851 |
T |
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| Q |
271 |
gattttattagatgacataattgaaaaacatgtgcattatggtaaaaatgcagaaaaacataaacataacaattcatagaaataacttaaattacaagaa |
370 |
Q |
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| T |
5984850 |
gattttattagatgacataattgaaaaacatgtgcattatggtaaaaatgcagaaaaacataaacataacaattcatagaaataactta------aagaa |
5984757 |
T |
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| Q |
371 |
gtctcgactaaac-tagaaagtaacgaaaaacaaatataacgaatcttaaaggtctttctaagtatctgagcaactagaagcttgagttgatcttcttct |
469 |
Q |
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| T |
5984756 |
gtctcggctaaacttagaaagtaacgaaaaacaaatataacgaatcttaaaggtctttctaagtatctgagcaactagaagcttgagttga---tcttct |
5984660 |
T |
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| Q |
470 |
tcaaccttcttttattt-aaccttgaaaagatggagacctcaaatccccaaagtttgagtcttctgtttgtatcactcgaaatcttgaaagccttcacaa |
568 |
Q |
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| T |
5984659 |
tcaaccttcttttatttaaaccttgaaaagatagagacctcaaatccccaaagtttgagtcttctgtttgtatcactcgaaatcttgaaagccttcacaa |
5984560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 8541995 - 8542093
Alignment:
| Q |
17 |
ctattctcgcttcaaatcctcgcactacttacttctacatttcaaccatcaactaaagcctccttcactatccatctacactctaaactatcactacta |
115 |
Q |
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| T |
8541995 |
ctattcttgctccaagtcctcacactacttactattatatttcaactatcaactaaagccttcttcactatccaactacactcttaagtatcactacta |
8542093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 5985115 - 5985070
Alignment:
| Q |
40 |
actacttacttctacatttcaaccatcaactaaagcctccttcact |
85 |
Q |
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| T |
5985115 |
actagttactactacatatcaaccatcaactaaagccttcttcact |
5985070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 26947243 - 26947132
Alignment:
| Q |
17 |
ctattctcgcttcaaatcctcgcactacttacttctacatttcaaccatcaactaaagcctccttcactatccatctacactctaaactatcactacta- |
115 |
Q |
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| T |
26947243 |
ctattcttgctccaagtcctcacactacttactactatatttcaactatcaactaaagccttcttcactatccaactacactctaaactatcactaatac |
26947144 |
T |
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| Q |
116 |
ccaaaatactaa |
127 |
Q |
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| T |
26947143 |
ccaaaatactaa |
26947132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 26949532 - 26949445
Alignment:
| Q |
41 |
ctacttacttctacatttcaaccatcaactaaagcctccttcactatccatctacactctaaactatcactacta-ccaaaatactaa |
127 |
Q |
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| T |
26949532 |
ctacttactactatatttcaactatcaactaaagccttctttactatccaactacactctaaactatcactactacccaaaatactaa |
26949445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 40286038 - 40286149
Alignment:
| Q |
17 |
ctattctcgcttcaaatcctcgcactacttacttctacatttcaaccatcaactaaagcctccttcactatccatctacactctaaactatcactact-a |
115 |
Q |
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| T |
40286038 |
ctattcttgctccaagtcctcacactacttactactatatttcaactatcaaccaaagccttcttcactatccaactacactctaaactatcactactgc |
40286137 |
T |
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| Q |
116 |
ccaaaatactaa |
127 |
Q |
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| T |
40286138 |
ccaaaatactaa |
40286149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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