View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_10 (Length: 395)
Name: NF17906_low_10
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 45642303 - 45642644
Alignment:
| Q |
1 |
tgcttcgtgtttcagcaacctttgtgtttgcacctccattctctctccaacgaaaccacacgctttgacgacaaactgtggtggactgaaatatgtgcac |
100 |
Q |
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| T |
45642303 |
tgcttcgtgtttcagcaacctttgtgtttgcacctccattctctctccaacgaaaccacatgctttgacgacaaactgtggtggactgaaatatgtgcac |
45642402 |
T |
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| Q |
101 |
aaaggtacgtggtacattacc-nnnnnnntactgacgtgtcttgtggagctgtgttcggcacgtgtacttcgtttacgggtttggaatcgttagatctga |
199 |
Q |
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| T |
45642403 |
aaaggtacgtggtacattaccaaaaaaaatactgacgtgtcttgtggagctgtgttcggcacgtgtacttcgtttacgtgtttggaatcgttagatctga |
45642502 |
T |
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| Q |
200 |
gtttgaataactacaagttct------ttgttgttgttgtttagtctgaaatgaataacgatggggaata-ggtttcggaattggcgttgatgggtcatg |
292 |
Q |
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| T |
45642503 |
gtttgaataactacaagttctttgttgttgttgttgttgtttagtctgaaatgaataacgatggggaatagggttttggaattggcgttgatgggtcatg |
45642602 |
T |
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| Q |
293 |
gatttggcgttgatgtgtcagaattgacggtgttagcgttga |
334 |
Q |
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| T |
45642603 |
gatttggcgttgatgtgtcagaattgacggtgttagcgttga |
45642644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 43437339 - 43437303
Alignment:
| Q |
175 |
acgggtttggaatcgttagatctgagtttgaataact |
211 |
Q |
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| T |
43437339 |
acgggtttggaattgttagatctgagttcgaataact |
43437303 |
T |
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