View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_11 (Length: 390)
Name: NF17906_low_11
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 32262540 - 32262320
Alignment:
| Q |
7 |
gaagacacatcattaatattttggtggtaaccaaattttaacataatnnnnnnntcaatataaaggattnnnnnnncccaatcgacgactcactgtttaa |
106 |
Q |
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| T |
32262540 |
gaagacacaccattaatattttggtggtaaccaaattttaacataataaaaaaatcaatataaaggataaaaaaaacccaatccatgactcattgtttaa |
32262441 |
T |
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| Q |
107 |
tacataataataacatttttccaccgattgctgcacaaagttatattgccgtccatcc-nnnnnnnttatgcaatacaaatctgctcccagccacaacca |
205 |
Q |
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| T |
32262440 |
tacataataataacattgttccaccaattgctgcacaaagttatattgtcgtccatccaaaaaaaattatgcaatacaaatctgcccccatccacaacca |
32262341 |
T |
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| Q |
206 |
atcttgaaatgtgaatctgaa |
226 |
Q |
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||||||||||||||||||||| |
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| T |
32262340 |
atcttgaaatgtgaatctgaa |
32262320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 32262226 - 32262176
Alignment:
| Q |
319 |
ggacaatgctctattaagattggacagtaagttcaagttatacaaaagtaa |
369 |
Q |
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| T |
32262226 |
ggacaatgctctattaagattggacagtaagttcaagttatacaaaagtaa |
32262176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 35614654 - 35614435
Alignment:
| Q |
7 |
gaagacacatcattaatattttggtggtaaccaaattttaacataatnnnnnnntcaatataaaggattnnnnnnncccaatcgacgactcactgtttaa |
106 |
Q |
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| T |
35614654 |
gaagacacaccattaatattttggtggtaaccaaattttaacataataaaaaaatcaatataaaggat-aaaaaaactcaatc----actcactgtttaa |
35614560 |
T |
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| Q |
107 |
tacataataataacatttttccaccgattgctgcacaaagttatattgccgtccatcc-nnnnnnnttatgcaatacaaatctgctcccagccacaacca |
205 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |
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| T |
35614559 |
tacataataataacatttttccaccaattgctgcacaaagttatattgccgtccatccaaaaaaaattatgcaatacaaatctgccctcagccacaacca |
35614460 |
T |
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| Q |
206 |
atcttgaaatgtgaatctgaatcac |
230 |
Q |
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| T |
35614459 |
atcttgaaatgtgaatctgaatcac |
35614435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 35614341 - 35614295
Alignment:
| Q |
319 |
ggacaatgctctattaagattggacagtaagttcaagttatacaaaa |
365 |
Q |
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| T |
35614341 |
ggacaatgctctattaagattggacagtaagttcaagttatacaaaa |
35614295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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