View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_13 (Length: 368)
Name: NF17906_low_13
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 8244768 - 8244619
Alignment:
| Q |
32 |
aatttctcaaatatatactattatgtaacgtacatcaagaacaatcgtaacatttttcaatattcaacatcatgagtaaaaatcttattcatcaaatcaa |
131 |
Q |
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| T |
8244768 |
aatttctcaaatatatactattatgtaacgtacatcaagaacaatcgtaacatttttcaatattcaacatcatgagtaaaaatcttattcatcaaatcaa |
8244669 |
T |
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| Q |
132 |
attattattgataagtaaatgatccccttcaatcacatatgtctacataa |
181 |
Q |
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| T |
8244668 |
attattattgataagtaaatgatccccttcaatcacatatgtctacataa |
8244619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 8248837 - 8248688
Alignment:
| Q |
32 |
aatttctcaaatatatactattatgtaacgtacatcaagaacaatcgtaacatttttcaatattcaacatcatgagtaaaaatcttattcatcaaatcaa |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8248837 |
aatttctcaaatatatactattatgtaacgtacatcaagaacaatcgtaacatttttcaatattcaacatcatgagtaaaaatcttattcatcaaatcaa |
8248738 |
T |
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| Q |
132 |
attattattgataagtaaatgatccccttcaatcacatatgtctacataa |
181 |
Q |
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| T |
8248737 |
attattattgataagtaaatgatccccttcaatcacatatgtctacataa |
8248688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 8244517 - 8244439
Alignment:
| Q |
281 |
cttatatatcaaattatttattagtttccgtaatcacatcacatga---tatgtatcaagaataatcgtaattaatttt |
356 |
Q |
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| T |
8244517 |
cttatatatcaaattatttattagtttccgcaatcacatcacatgatagtatgtatcaagaataatcgtaattaatttt |
8244439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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