View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_15 (Length: 359)
Name: NF17906_low_15
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 10189910 - 10190253
Alignment:
| Q |
1 |
ccgaggtggtgaggtttaggtaaatgaaaagcattcgtgttccagcaaatacgacgnnnnnnnnnnnnngaaatttaattaagtcaatctataactttca |
100 |
Q |
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| T |
10189910 |
ccgaggtggtggggtttaggtaaatgaaaagcattcgtgttccagcaaatacgacgaaaaatgaaaaaagaaattcaattaagtcaatctataactttca |
10190009 |
T |
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| Q |
101 |
agtgtttgttctcaaaatagattaataaagttgtttaaaatttgacccaatttnnnnnnnncttaagacatccaaacatgtcctcaagatgattactgca |
200 |
Q |
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| T |
10190010 |
agtgtttgttctcaaaatagattaataaagttgtttaaaatttgacccaatttaaaaaaaacttaagacatccaaacatgtcctcaagatgattactgca |
10190109 |
T |
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| Q |
201 |
atgtttgcaaagcgtgtaaaagaccatacaggaagaaaacgaacaaaagattcaataatgtaagaagtctaaatgaagtgaagtaaacaatacatatcat |
300 |
Q |
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| T |
10190110 |
atgtttgcaaagcgtgtaaaagaccatacaggaagaaaacgaacaaaagattcaataatgtaagaagtctaaatgaagtgaagtaaacaatacatatcat |
10190209 |
T |
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| Q |
301 |
ggattatggatttgtccaatacaaaacagttaacacatgatact |
344 |
Q |
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| T |
10190210 |
ggattatggatttgtccaatacaaaacagttaacacatgatact |
10190253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 162 - 294
Target Start/End: Complemental strand, 19463606 - 19463473
Alignment:
| Q |
162 |
cttaagacatccaaacatgtcctcaagatgattactgcaatgtttgcaaagcgtgtaa-aagaccatacaggaagaaaacgaacaaaagattcaataatg |
260 |
Q |
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| T |
19463606 |
cttaagacatccaaacatgtcctcaagatgattactgcaatgtctgcaaagcgtgtaacaagaccattcaggaagaaaacgaacaaaaaaatcaataatg |
19463507 |
T |
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| Q |
261 |
taagaagtctaaatgaagtgaagtaaacaataca |
294 |
Q |
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| T |
19463506 |
taagaagtctaaatgaagtgaagtgaataataca |
19463473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 19463661 - 19463620
Alignment:
| Q |
15 |
tttaggtaaatgaaaagcattcgtgttccagcaaatacgacg |
56 |
Q |
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| T |
19463661 |
tttaggtaaatgaaaagcattcgtgttctagcaaatacgacg |
19463620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 19463429 - 19463382
Alignment:
| Q |
284 |
taaacaatacatatcatggattatggatttgtccaatacaaaacagtta |
332 |
Q |
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| T |
19463429 |
taaacaatacatatcatggattatgga-tagtccaatacaaaacagtta |
19463382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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