View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_16 (Length: 336)
Name: NF17906_low_16
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 34320804 - 34320493
Alignment:
| Q |
18 |
aataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtgatggaggtgaatgcatagaac |
117 |
Q |
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| T |
34320804 |
aataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtgatggaggtgaatgcatagaac |
34320705 |
T |
|
| Q |
118 |
tagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaa |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320704 |
tagaagttgccattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaa |
34320605 |
T |
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| Q |
218 |
aatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatactaataaccctttatcttcttcttcttcttgtaatttt |
317 |
Q |
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| T |
34320604 |
aatagttaaatccctttgtggaaaaacagaagctcctccatcaagtaaaggaaaaggtaatactaataaccctttatcttcttcttcttcttgtaatttt |
34320505 |
T |
|
| Q |
318 |
tggttgatgatg |
329 |
Q |
| |
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|||||||||||| |
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| T |
34320504 |
tggttgatgatg |
34320493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 309
Target Start/End: Complemental strand, 34329703 - 34329424
Alignment:
| Q |
27 |
gtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtgatggaggtgaatgcatagaactagaagttg |
126 |
Q |
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| T |
34329703 |
gtcttgaaatttaatcccgttattgaaaccgtgcatttgtaaatccatgcagtcacaacttgtacacgtgtgggag---aatgcaccgaactagaagttg |
34329607 |
T |
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| Q |
127 |
ctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaatagttaa |
226 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | | ||||||||| | ||||||| ||| |
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| T |
34329606 |
ccattttcttaagggacttgatcattgagggttgaaacacaaatcttttacacaccacattgttttctctcttaagaacaagttcttgaaaaataggtaa |
34329507 |
T |
|
| Q |
227 |
atccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatactaataaccctttatcttcttcttcttctt |
309 |
Q |
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||| ||||||||||| | ||||||||||||||||| ||| |||| |||||| ||||||||||||| ||| |||||| ||||| |
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| T |
34329506 |
atctctttgtggaaacattgaagctcctccatcaaggaaatgaaagggtaattctaataaccctttttctccttctttttctt |
34329424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 36622034 - 36622252
Alignment:
| Q |
22 |
aagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtgatggaggtgaatgcatagaactaga |
121 |
Q |
| |
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||||||||||||||||||| ||||||| ||| || ||| |||| |||||||||||| |||| |||| || |||| |||| || |||| |||||||| |
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| T |
36622034 |
aagccgtctggaaatttaaccccattattgatacagcatgcttgtaaatccatgcaattacaacttgcacgcgtgtgggag---aaggcatggaactaga |
36622130 |
T |
|
| Q |
122 |
agttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaata |
221 |
Q |
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|||| | ||||||||||| ||||||||||| | |||||||| |||||||||||| || | |||||||||| |||| |||||||| ||||||||||||| |
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| T |
36622131 |
agttaccattgccttaagagacttgatcatcgcaggttgaaaaacaaaccttttaaactcaacattgttttctctctttaacacattttctgggaaaata |
36622230 |
T |
|
| Q |
222 |
gttaaatccctttgtggaaaaa |
243 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
36622231 |
ggtaaatccctttgtggaaaaa |
36622252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 292
Target Start/End: Original strand, 36627261 - 36627526
Alignment:
| Q |
24 |
gccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtgatggaggtgaatgcatagaactagaag |
123 |
Q |
| |
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||||||||||||||||| ||||||| |||||| ||| |||| ||||||||||||||||| ||||||| | | |||| ||||||| |||||||||| |
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| T |
36627261 |
gccgtctggaaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttacaacttgtacttgcgtgggag---aatgcatggaactagaag |
36627357 |
T |
|
| Q |
124 |
ttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaatagt |
223 |
Q |
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| | ||||||||||| ||||| ||||||| |||||||| |||||||||||| | || |||||||||| | || ||| ||| | ||||||||| |||| |
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| T |
36627358 |
tcaccattgccttaagagacttaatcattgcaggttgaaaaacaaaccttttaaatacgacattgttttctttctttatcaccatttctgggaagatagg |
36627457 |
T |
|
| Q |
224 |
taaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatactaataacccttt |
292 |
Q |
| |
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||||||||||||||||||| | || ||| ||||||||||| || ||| ||||||||||| |||| |
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| T |
36627458 |
caaatccctttgtggaaaaattgttgcccctgcatcaagtaaactcaagggtgatactaataactcttt |
36627526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 292
Target Start/End: Original strand, 36632833 - 36633098
Alignment:
| Q |
24 |
gccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtgatggaggtgaatgcatagaactagaag |
123 |
Q |
| |
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||||| ||||||||||| ||||||| |||||||| | |||| ||||||||||||||||| |||||||| ||| ||| |||||||| ||||||||| |
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| T |
36632833 |
gccgtttggaaatttaaccccattattgaaactgtatgcttgtaaatccatgcagttacaacttgtacatgtgtggga---gaatgcatgaaactagaag |
36632929 |
T |
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| Q |
124 |
ttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaacacaagttctgggaaaatagt |
223 |
Q |
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|| | ||||||||||| || |||||||||| |||||||| | |||||||||| | || |||||||||| |||| || | ||| |||||||||| || |
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| T |
36632930 |
ttaccattgccttaagagatttgatcattgcaggttgaaaaaaaaaccttttaaatacgacattgttttctctctttcccgcaatctctgggaaaacagg |
36633029 |
T |
|
| Q |
224 |
taaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatactaataacccttt |
292 |
Q |
| |
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||||||||||||||||||| |||||| ||||||||||| || ||| ||||||||||| |||| |
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| T |
36633030 |
caaatccctttgtggaaaaattattgctcctgcatcaagtaaacttaagggtgatactaataactcttt |
36633098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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