View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_18 (Length: 298)
Name: NF17906_low_18
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 563321 - 563597
Alignment:
| Q |
1 |
tgtaaccaaagaacaatagtatgataatagaatttatttttacggtcatacaaaagttaaaacagaaccaagctaagaaaaatacattacattcacattc |
100 |
Q |
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| T |
563321 |
tgtaaccaaagaacaatagtatgataatagaatttatttttacggtcatgcaaaagttaaaacagaaccaagctaagaaaaatacattgcatt------c |
563414 |
T |
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| Q |
101 |
atacgtacgtagaaaaaatatgaaactaattttcatcaaaaccttccatctttgtccatttggtgaccaattgggacataatgattatggaagatccatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
563415 |
atacgtacgtagaaaaaatatgaaactaattttcatcaaaaccttccatctttgtccattttgtgaccaattgggacatagtgattatggaagatccatc |
563514 |
T |
|
| Q |
201 |
tactttcattgcattagcagcagcatcttttagtactttgattcttccacgaatctcaattccttcatctacaattaacctct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
563515 |
tactttcattgcattagcagcagcatcttttagtactttcattcttctacgaatctcaattccttcatctacaattaacctct |
563597 |
T |
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