View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17906_low_2 (Length: 556)

Name: NF17906_low_2
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17906_low_2
NF17906_low_2
[»] scaffold1194 (1 HSPs)
scaffold1194 (77-533)||(6-461)
[»] chr8 (9 HSPs)
chr8 (77-533)||(16529176-16529636)
chr8 (192-526)||(16589302-16589634)
chr8 (415-526)||(16521034-16521145)
chr8 (77-166)||(16570605-16570694)
chr8 (1-78)||(16570493-16570570)
chr8 (215-308)||(16520803-16520896)
chr8 (192-318)||(26370706-26370832)
chr8 (451-511)||(26371190-26371250)
chr8 (1-59)||(16529071-16529129)
[»] chr3 (6 HSPs)
chr3 (192-318)||(2606513-2606639)
chr3 (389-511)||(2620686-2620808)
chr3 (452-511)||(2606086-2606145)
chr3 (413-509)||(39160695-39160791)
chr3 (193-308)||(2621145-2621260)
chr3 (218-315)||(39160881-39160978)


Alignment Details
Target: scaffold1194 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 77 - 533
Target Start/End: Original strand, 6 - 461
Alignment:
Q  77 ttaggtaatctgttttaacagatatccgaaagccttaagtaattaacgaatatattagcagtacaatattaatcaggattaggaacaatagaataggatt 176  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  6 ttaggtaattagttttaacagataaccgaaagccttaagtaattaacgaatatattagcagtacaatattagtaaggattaggaacaatagaataggatt 105  T
Q  177 agaatactctcacgcgtaccttaatcggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactaaggcc 276  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  106 agaatactctcacgcgtaccttaactggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactgaggcc 205  T
Q  277 aaataatgtgttgaaaatgacgctgaaatcaagtaaacatcaataattatgagagaattcccacaacataacttaaagaaacatccatttcaatattctt 376  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  206 aaataatgtgttgaaaatgacactgaaatcaagtaaacatcaataattatgagagacatcccacaacataacttaaagaaacatccatttcaatattctt 305  T
Q  377 ttgttagatgctacttacactgcaatgattcccatgattataacaggttttcggccatagcgatcagaaaccattccccataatatagatgtcaaagccc 476  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||| ||||||   |    
T  306 ttgttagatactacttacactgcaatgattcccatgattataacaggttttcgaccatagcgatctgaaaccattccccatagtacagacgtcaaacatc 405  T
Q  477 ttccaagcatgaatgaagatcctacaacattttcaatcatcttcaatgaaaaacata 533  Q
    ||||||||||||| |||||||||||| |||||||| ||| |||||||||| ||||||    
T  406 ttccaagcatgaacgaagatcctacagcattttcagtca-cttcaatgaagaacata 461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 77 - 533
Target Start/End: Original strand, 16529176 - 16529636
Alignment:
Q  77 ttaggtaatctgttttaacagatatccgaaagccttaagtaattaacgaatatattagcagtacaatattaatcaggattaggaacaatagaataggatt 176  Q
    |||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  16529176 ttaggtaatctgttttaacagaaaaccgaaagccttaagtaactaaccaatatattagcagtacaatagtaatcaggattaggaacaatagaataggagt 16529275  T
Q  177 agaatactct--cacgc--gtaccttaatcggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactaa 272  Q
    ||||||||||  |||||  |||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16529276 agaatactctgacacgcacgtaccttaactggcccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaataacccgtactaa 16529375  T
Q  273 ggccaaataatgtgttgaaaatgacgctgaaatcaagtaaacatcaataattatgagagaattcccacaacataacttaaag-aaacatccatttcaata 371  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| ||| || || ||||| | |||||| ||||| |||||||||||    
T  16529376 ggccaaataatgtgttgaaaatgacactgaaatcaagttaacatcaatgattatgagcgaaatcacaaaacatgatttaaagaaaacacccatttcaata 16529475  T
Q  372 ttcttttgttagatgctacttacactgcaatgattcccatgattataacaggttttcggccatagcgatcagaaaccattccccataatatagatgtcaa 471  Q
    ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||| |||||    
T  16529476 ttcatttgttggatactacttacactgcaatgattcccatgattataacaggttttcgaccatagcgatctgaaaccattccccatagtacagacgtcaa 16529575  T
Q  472 agcccttccaagcatgaatgaagatcctacaacattttcaatcatcttcaatgaaaaacata 533  Q
    |   |||||||||||||| |||||||||||| |||||||| ||| |||||||||| ||||||    
T  16529576 acatcttccaagcatgaacgaagatcctacagcattttcagtca-cttcaatgaagaacata 16529636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 192 - 526
Target Start/End: Original strand, 16589302 - 16589634
Alignment:
Q  192 gtaccttaatcggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactaaggccaaataatgtgttgaa 291  Q
    |||||||||  |||||||||||||||||||||| ||||||||||||||| |||  |||||||||||||||||||||||||||||| ||||||||||||||    
T  16589302 gtaccttaactggtccaagcacgccatttaaacctccgagaagaaatctggtggcaatagccatccaaaaacccgtactaaggccgaataatgtgttgaa 16589401  T
Q  292 aatgacgctgaaatcaagt-aaacatcaataattatgagagaattcccacaacataacttaaagaaacatccatttcaatattcttttgttagatgctac 390  Q
    |||||| |||||||||||| |||||| || |||| || ||||| || |||||||||||||||||||| |   ||  || |  | | || |||||| ||||    
T  16589402 aatgacactgaaatcaagtaaaacatgaacaattgtgggagaaatcacacaacataacttaaagaaaga---atcgcattcat-tgttattagatactac 16589497  T
Q  391 ttacactgcaatgattcccatgattataacaggttttcggccatagcgatcagaaaccattccccataatatagatgtcaaagcccttccaagcatgaat 490  Q
    ||||||||| || || ||||| ||||  ||||||||||| ||||||||||| ||||||||||||||||||| || ||| |||   |||||||||||| ||    
T  16589498 ttacactgcgataatccccattattaatacaggttttcgaccatagcgatctgaaaccattccccataatacagctgtgaaacatcttccaagcatgtat 16589597  T
Q  491 gaagatcct-acaacattttcaatcatcttcaatgaa 526  Q
    ||||||||| | |||||||||||||||  ||||||||    
T  16589598 gaagatcctaaaaacattttcaatcataatcaatgaa 16589634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 415 - 526
Target Start/End: Original strand, 16521034 - 16521145
Alignment:
Q  415 tataacaggttttcggccatagcgatcagaaaccattccccataatatagatgtcaaagcccttccaagcatgaatgaagatcctacaacattttcaatc 514  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |  || |||||||||||||| ||||||||||||||||||||     
T  16521034 tataacaggttttcgaccatagcgatcagaaaccattccccataatacagatgtcaatgttctaccaagcatgaatgatgatcctacaacattttcaatt 16521133  T
Q  515 atcttcaatgaa 526  Q
    |||  |||||||    
T  16521134 atcaccaatgaa 16521145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 16570605 - 16570694
Alignment:
Q  77 ttaggtaatctgttttaacagatatccgaaagccttaagtaattaacgaatatattagcagtacaatattaatcaggattaggaacaata 166  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  16570605 ttaggtaattagttttaacagataaccgaaagccttaagtaattaacgaatatattagcagtacaatattagtaaggattaggaacaata 16570694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 16570493 - 16570570
Alignment:
Q  1 tgttaaatacagaaatatttcatatacatacataaactaaaatttgaataagattgaactagtaatggatacaaattt 78  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||    
T  16570493 tgttaaatacagaaatatttcatatacataaataaattaaaatttgaataagattgaacaagtaatggatacaaattt 16570570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 308
Target Start/End: Original strand, 16520803 - 16520896
Alignment:
Q  215 ccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactaaggccaaataatgtgttgaaaatgacgctgaaatcaa 308  Q
    ||||||||| |||| | ||||||||| ||||||| |||||||||||||| ||||||||||||||| | |||||||| || ||| ||||||||||    
T  16520803 ccatttaaagttcccaaaagaaatcttgtgataacagccatccaaaaactcgtactaaggccaaaaagtgtgttgagaacgacactgaaatcaa 16520896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 318
Target Start/End: Original strand, 26370706 - 26370832
Alignment:
Q  192 gtaccttaatcggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactaaggccaaataatgtgttgaa 291  Q
    ||||||| || ||||||||||  |||||||||||||| |||| ||| |  ||  ||| ||||||||||||||  || ||||||||||||| |||||||||    
T  26370706 gtaccttcattggtccaagcaaaccatttaaacttccaagaaaaaaccgtgttgtaacagccatccaaaaacttgtgctaaggccaaatagtgtgttgaa 26370805  T
Q  292 aatgacgctgaaatcaagtaaacatca 318  Q
    |||||  ||||||| |||||| |||||    
T  26370806 aatgatactgaaataaagtaatcatca 26370832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 511
Target Start/End: Original strand, 26371190 - 26371250
Alignment:
Q  451 tccccataatatagatgtcaaagcccttccaagcatgaatgaagatcctacaacattttca 511  Q
    |||||| ||||| ||||||||||  |||||||||||| ||| |||||||||||||||||||    
T  26371190 tccccacaatattgatgtcaaagatcttccaagcatgtatgcagatcctacaacattttca 26371250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16529071 - 16529129
Alignment:
Q  1 tgttaaatacagaaatatttcatatacatacataaactaaaatttgaataagattgaac 59  Q
    |||||||||||||| |||||||||||||  | |||| | ||||||||||||||||||||    
T  16529071 tgttaaatacagaagtatttcatatacacgcctaaattgaaatttgaataagattgaac 16529129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 2606639 - 2606513
Alignment:
Q  192 gtaccttaatcggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactaaggccaaataatgtgttgaa 291  Q
    ||||||| || ||||||||||  |||||||||| ||| |||| ||| | |||  ||| |||||||||||||| ||| ||||||||||||| |||||||||    
T  2606639 gtaccttcattggtccaagcaaaccatttaaacatccaagaaaaaaccgcgttgtaacagccatccaaaaactcgtgctaaggccaaatagtgtgttgaa 2606540  T
Q  292 aatgacgctgaaatcaagtaaacatca 318  Q
     ||||  |||||||||||||| |||||    
T  2606539 gatgatactgaaatcaagtaatcatca 2606513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 511
Target Start/End: Complemental strand, 2620808 - 2620686
Alignment:
Q  389 acttacactgcaatgattcccatgattataacaggttttcggccatagcgatcagaaaccattccccataatatagatgtcaaagcccttccaagcatga 488  Q
    |||||||| | ||| ||||| || || | |||||||||||| ||||||||||| |  | |||||||||||||||||||||| |||| || |||||||||     
T  2620808 acttacacagaaataattcctattatcacaacaggttttcgaccatagcgatcggctatcattccccataatatagatgtcgaagctctaccaagcatgt 2620709  T
Q  489 atgaagatcctacaacattttca 511  Q
    | | ||||||||  |||||||||    
T  2620708 aggcagatcctatgacattttca 2620686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 511
Target Start/End: Complemental strand, 2606145 - 2606086
Alignment:
Q  452 ccccataatatagatgtcaaagcccttccaagcatgaatgaagatcctacaacattttca 511  Q
    |||||| |||| ||||||||||  |||||||||||||||| |||||||||||||||||||    
T  2606145 ccccatgatattgatgtcaaagatcttccaagcatgaatgcagatcctacaacattttca 2606086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 509
Target Start/End: Complemental strand, 39160791 - 39160695
Alignment:
Q  413 attataacaggttttcggccatagcgatcagaaaccattccccataatatagatgtcaaagcccttccaagcatgaatgaagatcctacaacatttt 509  Q
    |||||||| |||||||  |||||||||||||| |  || ||||| | ||||||||||||||  || |||| |||| ||||||||||| |||||||||    
T  39160791 attataactggttttctaccatagcgatcagatattataccccacagtatagatgtcaaagttctaccaaacatgtatgaagatcctgcaacatttt 39160695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 2621260 - 2621145
Alignment:
Q  193 taccttaatcggtccaagcacgccatttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactaaggccaaataatgtgttgaaa 292  Q
    |||||| || ||||||||||  |||||||||| ||| ||||  |||||| |  ||| ||||||||||||||  || | ||||||||||| ||||||||||    
T  2621260 taccttcattggtccaagcaaaccatttaaacctccaagaacgaatctcatcgtaacagccatccaaaaacttgtgcaaaggccaaatagtgtgttgaaa 2621161  T
Q  293 atgacgctgaaatcaa 308  Q
    || |  ||||||||||    
T  2621160 attatactgaaatcaa 2621145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 39160978 - 39160881
Alignment:
Q  218 tttaaacttccgagaagaaatctcgtgataatagccatccaaaaacccgtactaaggccaaataatgtgttgaaaatgacgctgaaatcaagtaaaca 315  Q
    ||||||||||| |||||||||||| ||   ||||||||||| | |   || ||||| ||||| || |||||||||||||| ||||||||||| |||||    
T  39160978 tttaaacttccaagaagaaatctcatgccgatagccatccatagatttgtgctaagaccaaaaaacgtgttgaaaatgacactgaaatcaagcaaaca 39160881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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