View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17906_low_22 (Length: 246)
Name: NF17906_low_22
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17906_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2016624 - 2016745
Alignment:
| Q |
1 |
taccaaattatgtgctttgacatttatattgtaaataaaaaataattccttttgactcaaatattaaatgtcaagtcatttggtggttgattacattgaa |
100 |
Q |
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| T |
2016624 |
taccaaagtatgtgctttgacatttatattgtaaataataaaaatttccttttgactcaaatattaaatgtcaagtcatttggtggttgattacattgaa |
2016723 |
T |
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| Q |
101 |
ttaacattctattttgttttgt |
122 |
Q |
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| T |
2016724 |
ttaacattctatttggttttgt |
2016745 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 2016778 - 2016843
Alignment:
| Q |
165 |
tgtggtgtttgatggtctcattttggtaacaaaacaagactttgtctaatatgtaaaatggtcttg |
230 |
Q |
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| T |
2016778 |
tgtggtgtttgatggtctcattttggtaacaaaacaagactttgtctaatatgtaaaatgttcttg |
2016843 |
T |
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