View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17906_low_24 (Length: 237)

Name: NF17906_low_24
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17906_low_24
NF17906_low_24
[»] chr3 (6 HSPs)
chr3 (189-225)||(50524809-50524845)
chr3 (189-224)||(41753072-41753107)
chr3 (189-224)||(1801441-1801476)
chr3 (190-225)||(45103105-45103140)
chr3 (190-224)||(1272557-1272591)
chr3 (191-224)||(41752961-41752994)
[»] chr5 (5 HSPs)
chr5 (189-224)||(19655266-19655301)
chr5 (190-224)||(2953298-2953332)
chr5 (190-224)||(16971252-16971286)
chr5 (191-224)||(19655155-19655188)
chr5 (190-222)||(28818922-28818954)
[»] chr8 (8 HSPs)
chr8 (191-224)||(22649842-22649875)
chr8 (190-224)||(5033269-5033303)
chr8 (190-220)||(8243393-8243423)
chr8 (190-224)||(33841587-33841621)
chr8 (191-224)||(5033158-5033191)
chr8 (191-224)||(8243496-8243529)
chr8 (191-224)||(33841699-33841732)
chr8 (191-224)||(35441077-35441110)
[»] chr4 (7 HSPs)
chr4 (193-225)||(44380037-44380069)
chr4 (190-222)||(55090001-55090033)
chr4 (190-222)||(55090097-55090129)
chr4 (190-224)||(6271810-6271844)
chr4 (190-224)||(42375118-42375152)
chr4 (191-224)||(51265442-51265475)
chr4 (190-222)||(47404590-47404622)
[»] chr7 (7 HSPs)
chr7 (190-225)||(42628402-42628437)
chr7 (190-224)||(11016977-11017011)
chr7 (191-224)||(11016866-11016899)
chr7 (191-224)||(34854803-34854836)
chr7 (191-224)||(41018336-41018369)
chr7 (189-222)||(41945965-41945998)
chr7 (191-224)||(45231958-45231991)
[»] chr2 (7 HSPs)
chr2 (191-221)||(15011382-15011412)
chr2 (190-224)||(32545896-32545930)
chr2 (190-224)||(38933695-38933729)
chr2 (191-224)||(16514421-16514454)
chr2 (189-221)||(2893967-2893999)
chr2 (192-224)||(6217222-6217254)
chr2 (190-222)||(14464560-14464592)
[»] chr1 (7 HSPs)
chr1 (190-224)||(48993913-48993947)
chr1 (190-224)||(49444909-49444943)
chr1 (191-224)||(29179705-29179738)
chr1 (191-224)||(46931994-46932027)
chr1 (191-224)||(48994025-48994058)
chr1 (193-225)||(15220918-15220950)
chr1 (191-223)||(36290516-36290548)


Alignment Details
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 50524845 - 50524809
Alignment:
Q  189 acacttgggtgacatagagttgagtgacattggtgat 225  Q
    |||||||||||||||||||||||||||||||||||||    
T  50524845 acacttgggtgacatagagttgagtgacattggtgat 50524809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 41753107 - 41753072
Alignment:
Q  189 acacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  41753107 acacttgggtgacatagagttgagtgacattggtga 41753072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 1801441 - 1801476
Alignment:
Q  189 acacttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||||| |||||||||||||    
T  1801441 acacttgggtgacatagagttgggtgacattggtga 1801476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 45103105 - 45103140
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtgat 225  Q
    ||||||||||||||||||||| ||||||||||||||    
T  45103105 cacttgggtgacatagagttgggtgacattggtgat 45103140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 1272591 - 1272557
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  1272591 cacttgggtgacatagagttgggtgacattggtga 1272557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 41752961 - 41752994
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  41752961 acttgggtgacatagagttgggtgacattggtga 41752994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 19655301 - 19655266
Alignment:
Q  189 acacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  19655301 acacttgggtgacatagagttgagtgacattggtga 19655266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 2953332 - 2953298
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  2953332 cacttgggtgacatagagttgggtgacattggtga 2953298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 16971286 - 16971252
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  16971286 cacttgggtgacatagagttgggtgacattggtga 16971252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 19655155 - 19655188
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  19655155 acttgggtgacatagagttgggtgacattggtga 19655188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 28818922 - 28818954
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggt 222  Q
    ||||||||||||||||||||| |||||||||||    
T  28818922 cacttgggtgacatagagttgggtgacattggt 28818954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 22649842 - 22649875
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||||||||||||||||    
T  22649842 acttgggtgacatagagttgagtgacattggtga 22649875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 5033303 - 5033269
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  5033303 cacttgggtgacatagagttgggtgacattggtga 5033269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 220
Target Start/End: Original strand, 8243393 - 8243423
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattg 220  Q
    |||||||||||||||||||||||||||||||    
T  8243393 cacttgggtgacatagagttgagtgacattg 8243423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 33841587 - 33841621
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  33841587 cacttgggtgacatagagttgggtgacattggtga 33841621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 5033158 - 5033191
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  5033158 acttgggtgacatagagttgggtgacattggtga 5033191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 8243529 - 8243496
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  8243529 acttgggtgacatagagttgggtgacattggtga 8243496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 33841732 - 33841699
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  33841732 acttgggtgacatagagttgggtgacattggtga 33841699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 35441110 - 35441077
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  35441110 acttgggtgacatagagttgggtgacattggtga 35441077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 44380069 - 44380037
Alignment:
Q  193 ttgggtgacatagagttgagtgacattggtgat 225  Q
    |||||||||||||||||||||||||||||||||    
T  44380069 ttgggtgacatagagttgagtgacattggtgat 44380037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 55090001 - 55090033
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggt 222  Q
    |||||||||||||||||||||||||||||||||    
T  55090001 cacttgggtgacatagagttgagtgacattggt 55090033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 55090129 - 55090097
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggt 222  Q
    |||||||||||||||||||||||||||||||||    
T  55090129 cacttgggtgacatagagttgagtgacattggt 55090097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 6271844 - 6271810
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||||||||| ||||||||    
T  6271844 cacttgggtgacatagagttgagtgatattggtga 6271810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 42375152 - 42375118
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  42375152 cacttgggtgacatagagttgggtgacattggtga 42375118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 51265442 - 51265475
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  51265442 acttgggtgacatagagttgggtgacattggtga 51265475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 47404590 - 47404622
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggt 222  Q
    ||||||||||||||||||||| |||||||||||    
T  47404590 cacttgggtgacatagagttgggtgacattggt 47404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 225
Target Start/End: Complemental strand, 42628437 - 42628402
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtgat 225  Q
    ||||||||||||||||||||| ||||||||||||||    
T  42628437 cacttgggtgacatagagttgggtgacattggtgat 42628402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 11017011 - 11016977
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  11017011 cacttgggtgacatagagttgggtgacattggtga 11016977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 11016866 - 11016899
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  11016866 acttgggtgacatagagttgggtgacattggtga 11016899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 34854836 - 34854803
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  34854836 acttgggtgacatagagttgggtgacattggtga 34854803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 41018369 - 41018336
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  41018369 acttgggtgacatagagttgggtgacattggtga 41018336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 41945998 - 41945965
Alignment:
Q  189 acacttgggtgacatagagttgagtgacattggt 222  Q
    |||||||||||||||| |||||||||||||||||    
T  41945998 acacttgggtgacataaagttgagtgacattggt 41945965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 45231991 - 45231958
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  45231991 acttgggtgacatagagttgggtgacattggtga 45231958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 15011412 - 15011382
Alignment:
Q  191 acttgggtgacatagagttgagtgacattgg 221  Q
    |||||||||||||||||||||||||||||||    
T  15011412 acttgggtgacatagagttgagtgacattgg 15011382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 32545930 - 32545896
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| ||||||||||||||    
T  32545930 cacttgggtgacatagagtttagtgacattggtga 32545896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 38933729 - 38933695
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  38933729 cacttgggtgacatagagttgggtgacattggtga 38933695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 16514421 - 16514454
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  16514421 acttgggtgacatagagttgggtgacattggtga 16514454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 2893967 - 2893999
Alignment:
Q  189 acacttgggtgacatagagttgagtgacattgg 221  Q
    |||||||||||||||||||||| ||||||||||    
T  2893967 acacttgggtgacatagagttgggtgacattgg 2893999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 6217222 - 6217254
Alignment:
Q  192 cttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||| |||||||||||||    
T  6217222 cttgggtgacatagagttgggtgacattggtga 6217254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 14464560 - 14464592
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggt 222  Q
    |||||| ||||||||||||||||||||||||||    
T  14464560 cacttgtgtgacatagagttgagtgacattggt 14464592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 48993913 - 48993947
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  48993913 cacttgggtgacatagagttgggtgacattggtga 48993947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 49444909 - 49444943
Alignment:
Q  190 cacttgggtgacatagagttgagtgacattggtga 224  Q
    ||||||||||||||||||||| |||||||||||||    
T  49444909 cacttgggtgacatagagttgggtgacattggtga 49444943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 29179738 - 29179705
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  29179738 acttgggtgacatagagttgggtgacattggtga 29179705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 46931994 - 46932027
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  46931994 acttgggtgacatagagttgggtgacattggtga 46932027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 48994058 - 48994025
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtga 224  Q
    |||||||||||||||||||| |||||||||||||    
T  48994058 acttgggtgacatagagttgggtgacattggtga 48994025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 15220950 - 15220918
Alignment:
Q  193 ttgggtgacatagagttgagtgacattggtgat 225  Q
    |||||||||||||||||| ||||||||||||||    
T  15220950 ttgggtgacatagagttgggtgacattggtgat 15220918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 36290548 - 36290516
Alignment:
Q  191 acttgggtgacatagagttgagtgacattggtg 223  Q
    |||||||||||||||||||| ||||||||||||    
T  36290548 acttgggtgacatagagttgggtgacattggtg 36290516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University