View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17906_low_26 (Length: 218)

Name: NF17906_low_26
Description: NF17906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17906_low_26
NF17906_low_26
[»] chr6 (2 HSPs)
chr6 (18-202)||(33040043-33040227)
chr6 (75-121)||(9620684-9620730)
[»] chr4 (2 HSPs)
chr4 (144-202)||(22057463-22057521)
chr4 (77-121)||(18524960-18525003)
[»] chr2 (2 HSPs)
chr2 (75-121)||(4104829-4104875)
chr2 (75-119)||(34257110-34257154)
[»] chr3 (1 HSPs)
chr3 (142-194)||(31016230-31016283)
[»] chr8 (1 HSPs)
chr8 (96-132)||(22845882-22845918)
[»] chr7 (1 HSPs)
chr7 (77-121)||(338236-338280)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 33040043 - 33040227
Alignment:
Q  18 tatttattatattaaaaagtttatgcactaaattgaagggagaatgatagatcaaatgcttaaatgcatttttgactccttaacctttaaaaagttgtga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  33040043 tatttattatattaaaaagtttatgcactaaattgaagggagaatgatagattaaatgcttaaatgcatttttgactccctaacctttaaaaagttgtga 33040142  T
Q  118 ttttacccctctaacnnnnnnnttacaattttgctctctatccttaggaaaatgtgatcttttgactctatctatatgaacatat 202  Q
    |||||||||||||||       | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33040143 ttttacccctctaacaaaaaaataacaattttgccctctatccttaggaaaatgtgatcttttgactctatctatatgaacatat 33040227  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 9620730 - 9620684
Alignment:
Q  75 gcttaaatgcatttttgactccttaacctttaaaaagttgtgatttt 121  Q
    |||||||  ||||| |||||||||||||||||||||||| |||||||    
T  9620730 gcttaaagacatttgtgactccttaacctttaaaaagttatgatttt 9620684  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 22057521 - 22057463
Alignment:
Q  144 aattttgctctctatccttaggaaaatgtgatcttttgactctatctatatgaacatat 202  Q
    |||||||| ||| ||||||| | ||||||| |||||||||||||| |||||||| ||||    
T  22057521 aattttgcgctcgatccttaaggaaatgtgttcttttgactctatatatatgaaaatat 22057463  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 18524960 - 18525003
Alignment:
Q  77 ttaaatgcatttttgactccttaacctttaaaaagttgtgatttt 121  Q
    |||||||||||||| || ||||||| |||||||||||||||||||    
T  18524960 ttaaatgcatttttaac-ccttaacttttaaaaagttgtgatttt 18525003  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 4104829 - 4104875
Alignment:
Q  75 gcttaaatgcatttttgactccttaacctttaaaaagttgtgatttt 121  Q
    |||||| |||||||||||| ||||||| |||||||| ||||||||||    
T  4104829 gcttaagtgcatttttgacaccttaacttttaaaaaattgtgatttt 4104875  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 34257110 - 34257154
Alignment:
Q  75 gcttaaatgcatttttgactccttaacctttaaaaagttgtgatt 119  Q
    |||||||||||||||| || ||||||| |||||||||||| ||||    
T  34257110 gcttaaatgcatttttaaccccttaacttttaaaaagttgcgatt 34257154  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 31016230 - 31016283
Alignment:
Q  142 acaattttgctctctatccttaggaaaatgt-gatcttttgactctatctatat 194  Q
    |||||||||||||||||| ||| ||||||||   ||||||||||||||||||||    
T  31016230 acaattttgctctctatctttaagaaaatgtctttcttttgactctatctatat 31016283  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 22845918 - 22845882
Alignment:
Q  96 cttaacctttaaaaagttgtgattttacccctctaac 132  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  22845918 cttaacttttaaaaagttgtgattttactcctctaac 22845882  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 338236 - 338280
Alignment:
Q  77 ttaaatgcatttttgactccttaacctttaaaaagttgtgatttt 121  Q
    ||||| || |||||||||||||||| |||||||||||| ||||||    
T  338236 ttaaaggcgtttttgactccttaacttttaaaaagttgggatttt 338280  T

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